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BaseInfo

ncRNA ID gra-miR8694a
Species Gossypium raimondii
Class miRNA
Genome position chr5:15218854-15218993 [+]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 11 - AGGAUGCACUGUCAGCAAAAGUAU - 34
Stem-loop(if miRNA) U  A               U                           AGG       ACC      U AC
 GC CCAAGCAGGAUGCAC GUCAGCAAAAGUAUUGAAAGCGUGUCU   UGGAAGC   UUCAGU G  A
 || ||||||||||||||| |||||||||||||||||||||||||||   |||||||   |||||| |
 UG GGUUUGUCCUGCGUG UAGUCGUUUUCAUGAUUUUCGCGUAGG   ACCUUCG   AAGUCA C  U
G  A               -                           CAG       CAA      - GG
Stem-loop sequence UGCACCAAGCAGGAUGCACUGUCAGCAAAAGUAUUGAAAGCGUGUCUAGGUGGAAGCACCUUCAGUUGACAUGGCACUGAAAACGCUUCCAGACGGAUGCGCUUUUAGUACUUUUGCUGAUGUGCGUCCUGUUUGGAGUG

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).