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BaseInfo

ncRNA ID	gra-miR8642
Species	Gossypium raimondii
Class	miRNA
Genome position	chr5:4343457-4343639 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	24
Mature sequence(if miRNA)	150 - UGAUCAAAACAGGAACGAAUUCAA - 173
Stem-loop(if miRNA)	G      A         C A     A          CCA UG             A     C      C    GG  ACAAUAA   AUUUA  AUAUUA CGUUUGAAU C UUUCU UUUUGGUCGC   U  UUAAAUUGAUAAC AAGAG CUUUUU UAAU  GU       CAC     A  |||||| ||||||||| | ||||| ||||||||||   |  ||||||||||||| ||||| |||||| ||||  ||       |||     A  UAUAAU GCAAACUUA G AAGGA AAAACUAGUG   G  AAUUUAACUAUUG UUUUC GAAAAA AUUG  CA       GUG     A -      C         A C     C          AAC GU             C     A      -    -A  -AAACUA   CAUAC
Stem-loop sequence	GAUAUUAACGUUUGAAUCCAUUUCUAUUUUGGUCGCCCAUUGUUAAAUUGAUAACAAAGAGCCUUUUUCUAAUGGGUACAAUAACACAUUUAAAACAUACGUGAUCAAAACAGUUAAAAAAGACUUUUCGUUAUCAAUUUAAUGGCAAGUGAUCAAAACAGGAACGAAUUCAAACGCUAAUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012580599.1	ncRNA:24   AACU--UAAGCAAGGACAAAACUAGU   1   *|||--||||*||||||||||*|||| targets:1851   AUGAUGAUUCUUUCCUGUUUUUAUCA   1876 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii serine/threonine-protein kinase PEPKR2-like (LOC105762735), transcript variant X1, mRNA	serine/threonine-protein kinase PEPKR2-like(LOC105762735)	coding protein	psRNATarget
XM_012580600.1	ncRNA:24   AACU--UAAGCAAGGACAAAACUAGU   1   *|||--||||*||||||||||*|||| targets:1838   AUGAUGAUUCUUUCCUGUUUUUAUCA   1863 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii serine/threonine-protein kinase PEPKR2-like (LOC105762735), transcript variant X2, mRNA	serine/threonine-protein kinase PEPKR2-like(LOC105762735)	coding protein	psRNATarget
XM_012580601.1	ncRNA:24   AACU--UAAGCAAGGACAAAACUAGU   1   *|||--||||*||||||||||*|||| targets:1628   AUGAUGAUUCUUUCCUGUUUUUAUCA   1653 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii serine/threonine-protein kinase PEPKR2-like (LOC105762735), transcript variant X3, mRNA	serine/threonine-protein kinase PEPKR2-like(LOC105762735)	coding protein	psRNATarget
XM_012584366.1	ncRNA:24   AACU--------UAAGCAAGGACAAAACUAGU   1   |||=--------|||*||||||*||||||||| targets:2583   UUGGUUAACCAUAUUGGUUCCUCUUUUGAUCA   2614 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii serine/threonine-protein kinase WNK8-like (LOC105765334), transcript variant X1, mRNA	serine/threonine-protein kinase WNK8-like(LOC105765334)	coding protein	psRNATarget
XM_012584367.1	ncRNA:24   AACU--------UAAGCAAGGACAAAACUAGU   1   |||=--------|||*||||||*||||||||| targets:2545   UUGGUUAACCAUAUUGGUUCCUCUUUUGAUCA   2576 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii serine/threonine-protein kinase WNK8-like (LOC105765334), transcript variant X2, mRNA	serine/threonine-protein kinase WNK8-like(LOC105765334)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).