ncRNA ID | gra-miR8645 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr5:3507099-3507231 [+] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 11 - UUGGUACCUGAACUUGACGUCU - 32 |
Stem-loop(if miRNA) |
AA      C         U         G  UC    C       CU       -  AA   AGU  U   GGUUCA AUUGGUACC GAACUUGAC UC  GGUU AAAUUGG  UUUAAGU CC  AUU   AC A   |||||| ||||||||| ||||||||| ||  |||| |||||||  ||||||| ||  |||   ||   CCAAGU UAAUCAUGG UUUGAACUG AG  UCAA UUUAACC  AAGUUUA GG  UAG   UG G AA      U         -         A  UA    U       --       U  AG   -AU  A |
Stem-loop sequence | AAGGUUCACAUUGGUACCUGAACUUGACGUCUCGGUUCAAAUUGGCUUUUAAGUCCAAAUUAGUACUAGAGUUAGAUGAGGUAUUUGAACCAAUUUUAACUAUGAAGUCAAGUUUGGUACUAAUUUGAACCAA |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |