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BaseInfo

ncRNA ID gra-miR8645
Species Gossypium raimondii
Class miRNA
Genome position chr5:3507099-3507231 [+]
Reference genome Graimondii2_0
Source miRBase
Length 22
Mature sequence(if miRNA) 11 - UUGGUACCUGAACUUGACGUCU - 32
Stem-loop(if miRNA) AA      C         U         G  UC    C       CU       -  AA   AGU  U
  GGUUCA AUUGGUACC GAACUUGAC UC  GGUU AAAUUGG  UUUAAGU CC  AUU   AC A
  |||||| ||||||||| ||||||||| ||  |||| |||||||  ||||||| ||  |||   ||
  CCAAGU UAAUCAUGG UUUGAACUG AG  UCAA UUUAACC  AAGUUUA GG  UAG   UG G
AA      U         -         A  UA    U       --       U  AG   -AU  A
Stem-loop sequence AAGGUUCACAUUGGUACCUGAACUUGACGUCUCGGUUCAAAUUGGCUUUUAAGUCCAAAUUAGUACUAGAGUUAGAUGAGGUAUUUGAACCAAUUUUAACUAUGAAGUCAAGUUUGGUACUAAUUUGAACCAA

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).