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BaseInfo

ncRNA ID gra-miR8723b
Species Gossypium raimondii
Class miRNA
Genome position chr5:374273-374618 [-]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 313 - CCAUUAACGGUGUAACAGUAAGCU - 336
Stem-loop(if miRNA) CCA       C      C       CA          A                A     -AAAC    A               A   G       C           --C     A        UUUAU   CUUUUAACUUCUUUUUUCUUUAUUCUCUUCUGCUUCUCCU
   UUAAUUG CAUUAA GGUGUAA  GUAAGCUGAU UGGCACGUUAAAUCAU AUUUU     AAAA UUUAGGUUAAAUUAU CAA UGGUCCC AUAUUUUUUUU   GUUUU AGCAAUUU     GUU                                        U
   ||||||| |||||| |||||||  |||||||||| |||||||||||||||| |||||     |||| ||||||||||||||| ||| ||||||| |||||||||||   ||||| ||||||||     |||
   AAUUAAC GUAAUU CCACAUU  CAUUCGACUA ACCGUGCAAUUUAGUA UAAAG     UUUU AAAUCCAAUUUAAUA GUU ACUAGGG UAUAAAAAAAA   CAAAA UCGUUAAA     AAA                                        U
CAC       A      A       AC          C                A     GUUAC    A               C   A       A           AAA     C        -UUAA   AAAGAAACUUCAAUUUUUUCUACCUCUUUCUUCCCUUUAU
Stem-loop sequence CCAUUAAUUGCCAUUAACGGUGUAACAGUAAGCUGAUAUGGCACGUUAAAUCAUAAUUUUAAACAAAAAUUUAGGUUAAAUUAUACAAGUGGUCCCCAUAUUUUUUUUCGUUUUAAGCAAUUUUUUAUGUUCUUUUAACUUCUUUUUUCUUUAUUCUCUUCUGCUUCUCCUUUUAUUUCCCUUCUUUCUCCAUCUUUUUUAACUUCAAAGAAAAAAAAUUAAAUUGCUCAAAACAAAAAAAAAAAUAUAGGGAUCAAUUGCAUAAUUUAACCUAAAAUUUUCAUUGGAAAUAAUGAUUUAACGUGCCACAUCAGCUUACCAUUACACCAUUAAUGACAAUUAACAC

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).