ncRNA ID | gra-miR8723b |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr5:374273-374618 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 313 - CCAUUAACGGUGUAACAGUAAGCU - 336 |
Stem-loop(if miRNA) |
CCA       C      C       CA          A                A     -AAAC    A               A   G       C           --C     A        UUUAU   CUUUUAACUUCUUUUUUCUUUAUUCUCUUCUGCUUCUCCU    UUAAUUG CAUUAA GGUGUAA  GUAAGCUGAU UGGCACGUUAAAUCAU AUUUU     AAAA UUUAGGUUAAAUUAU CAA UGGUCCC AUAUUUUUUUU   GUUUU AGCAAUUU     GUU                                        U    ||||||| |||||| |||||||  |||||||||| |||||||||||||||| |||||     |||| ||||||||||||||| ||| ||||||| |||||||||||   ||||| ||||||||     |||    AAUUAAC GUAAUU CCACAUU  CAUUCGACUA ACCGUGCAAUUUAGUA UAAAG     UUUU AAAUCCAAUUUAAUA GUU ACUAGGG UAUAAAAAAAA   CAAAA UCGUUAAA     AAA                                        U CAC       A      A       AC          C                A     GUUAC    A               C   A       A           AAA     C        -UUAA   AAAGAAACUUCAAUUUUUUCUACCUCUUUCUUCCCUUUAU |
Stem-loop sequence | CCAUUAAUUGCCAUUAACGGUGUAACAGUAAGCUGAUAUGGCACGUUAAAUCAUAAUUUUAAACAAAAAUUUAGGUUAAAUUAUACAAGUGGUCCCCAUAUUUUUUUUCGUUUUAAGCAAUUUUUUAUGUUCUUUUAACUUCUUUUUUCUUUAUUCUCUUCUGCUUCUCCUUUUAUUUCCCUUCUUUCUCCAUCUUUUUUAACUUCAAAGAAAAAAAAUUAAAUUGCUCAAAACAAAAAAAAAAAUAUAGGGAUCAAUUGCAUAAUUUAACCUAAAAUUUUCAUUGGAAAUAAUGAUUUAACGUGCCACAUCAGCUUACCAUUACACCAUUAAUGACAAUUAACAC |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |