ncRNA ID | gra-miR8680 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr4:62017078-62017285 [+] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 11 - ACAGUGGAGGUAUUGUGCCUG - 31 |
Stem-loop(if miRNA) |
-                   G         UG               C        CU  GUUCUGUUUCCUUACUCGAAGGAGAGCCCAACGGGUUCACGAA  GGACCCUCAGACAGUGGAG UAUUGUGCC  GGGUGUCUAUGCUCG UUUUAGCC  GU                                           G  ||||||||||||||||||| |||||||||  ||||||||||||||| ||||||||  ||                                           U  CCUGGGAGUUUGUCAUUUC AUAACACGG  CUCACAGAUACGAGU AAAAUCGG  CC                                           U G                   G         GU               C        UG  UGCCGGUUUACGAGUGUAAAGGAACCACCGCUCUGCGAUGGGU |
Stem-loop sequence | GGACCCUCAGACAGUGGAGGUAUUGUGCCUGGGGUGUCUAUGCUCGCUUUUAGCCCUGUGUUCUGUUUCCUUACUCGAAGGAGAGCCCAACGGGUUCACGAAGUUUGGGUAGCGUCUCGCCACCAAGGAAAUGUGAGCAUUUGGCCGUCCGUGGCUAAAACUGAGCAUAGACACUCUGGGCACAAUAGCUUUACUGUUUGAGGGUCCG |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |