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BaseInfo

ncRNA ID gra-miR8680
Species Gossypium raimondii
Class miRNA
Genome position chr4:62017078-62017285 [+]
Reference genome Graimondii2_0
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - ACAGUGGAGGUAUUGUGCCUG - 31
Stem-loop(if miRNA) -                   G         UG               C        CU  GUUCUGUUUCCUUACUCGAAGGAGAGCCCAACGGGUUCACGAA
 GGACCCUCAGACAGUGGAG UAUUGUGCC  GGGUGUCUAUGCUCG UUUUAGCC  GU                                           G
 ||||||||||||||||||| |||||||||  ||||||||||||||| ||||||||  ||                                           U
 CCUGGGAGUUUGUCAUUUC AUAACACGG  CUCACAGAUACGAGU AAAAUCGG  CC                                           U
G                   G         GU               C        UG  UGCCGGUUUACGAGUGUAAAGGAACCACCGCUCUGCGAUGGGU
Stem-loop sequence GGACCCUCAGACAGUGGAGGUAUUGUGCCUGGGGUGUCUAUGCUCGCUUUUAGCCCUGUGUUCUGUUUCCUUACUCGAAGGAGAGCCCAACGGGUUCACGAAGUUUGGGUAGCGUCUCGCCACCAAGGAAAUGUGAGCAUUUGGCCGUCCGUGGCUAAAACUGAGCAUAGACACUCUGGGCACAAUAGCUUUACUGUUUGAGGGUCCG

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).