| ncRNA ID | gra-miR8739 |
| Species | Gossypium raimondii |
| Class | miRNA |
| Genome position | chr4:61702568-61703023 [-] |
| Reference genome | Graimondii2_0 |
| Source | miRBase |
| Length | 24 |
| Mature sequence(if miRNA) | 11 - UAACUAAAUAGUGACACGUGGCAU - 34 |
| Stem-loop(if miRNA) |
G G A U U CA A U A GG G UA G C C A U G AAC A A UC AUA C C CUUUUUUUUUU -----U AUAAUGACAAU UAUACAUG CAUGCUAUGUGU ACUGUUU GUUAUUUUA CAGUCA CCAA UUUUAAUA UAGAA UGGAUG ACUUUUAAUA AAA ACCA UUUACU UUUAAUC AAUGUAUAG GAC AAUUUAUUUAUUUUUU AGUA G GGUAAAAUG AAUUUGGC CUA CAAGGACUU CAUG AUG UUUUUACC UCA U |||||||| |||||||||||| ||||||| ||||||||| |||||| |||| |||||||| ||||| |||||| |||||||||| ||| |||| |||||| ||||||| ||||||||| ||| |||||||||||||||| |||| | ||||||||| |||||||| ||| ||||||||| |||| ||| |||||||| ||| U AUGUGUAC GUACGGUGCACA UGAUAAA CAAUAAGAU GUCGGU GGUU AAAAUUAU AUCUU ACCUAC UGAAAAUUGU UUU UGGU AAAUGA AAAUUAG UUACAUGUC CUG UUAAAUGAGUAAAAAA UCAU C CCGUUUUAC UUAAACUG GAU GUUUCUGGA GUAC UAU AAAAAUGG AAG A - G G U U AC A C A UU A UC A U A C U - CUU C G UA AAC A - ----------- UUUGAA AAUUCCUUAUA |
| Stem-loop sequence | GUAUACAUGGCAUGCUAUGUGUAACUGUUUUGUUAUUUUAUCAGUCACACCAAAUUUUAAUAUUAGAAAUGGAUGGGACUUUUAAUAGAAAUAACCAGUUUACUCUUUAAUCCAAUGUAUAGAGACUAAUUUAUUUAUUUUUUGAGUAAACGAGGUAAAAUGAAAUUUGGCUCCUAAUACAAGGACUUCCAUGCAUGCUUUUUUUUUUUUUUUACCUUCAAUAAUGACAAUUUAAUAUUCCUUAAGAAAAGUUUGGUAAAAAUAUCAUGAAGGUCUUUGCAAUAGAUGUCAAAUUGCAUUUUGCCCCUUCUACUAAAAAAUGAGUAAAUUUGUCCCUGUACAUUAGAUUAAAUAGUAAAAUGGUCUUUUAUGUUAAAAGUUUCAUCCAAUUCUACUAUUAAAAAUUGGCAUGGCUGUUAGAAUAACUAAAUAGUGACACGUGGCAUGGCAUGUGUA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_012587546.1 |
|
2.5 | PREDICTED: Gossypium raimondii EG45-like domain containing protein (LOC105767940), mRNA | EG45-like domain containing protein(LOC105767940) | coding protein | psRNATarget |
| 1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |