| ncRNA ID | gra-miR7502d |
| Species | Gossypium raimondii |
| Class | miRNA |
| Genome position | chr4:61154822-61154966 [+] |
| Reference genome | Graimondii2_0 |
| Source | miRBase |
| Length | 24 |
| Mature sequence(if miRNA) | 112 - CUUUUAACAGUAGAAUUUGAUGGA - 135 |
| Stem-loop(if miRNA) |
U CAU G A ---------------------C - AUAGUUUAAUCAGA GUUAAAAGUUUCAUC UU UACUGUUAAGA CUGG UUGG UUG U ||||||||||||||| || ||||||||||| |||| |||| ||| A CAAUUUUUAAGGUAG AA AUGACAAUUUU GAUC UGUG ACC A A UUU G C AAAAAUAUACAGUUGUACUCAA G GUAUGGUAUACAGC |
| Stem-loop sequence | UGUUAAAAGUUUCAUCCAUUUGUACUGUUAAGAACUGGCUUGGUUGAUAGUUUAAUCAGAUAACGACAUAUGGUAUGCCAGGUGUAACUCAUGUUGACAUAUAAAAACUAGCUUUUAACAGUAGAAUUUGAUGGAAUUUUUAACA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_012617611.1 |
|
3.0 | PREDICTED: Gossypium raimondii protein trichome birefringence-like 5 (LOC105790165), transcript variant X4, mRNA | protein trichome birefringence-like 5(LOC105790165) | coding protein | psRNATarget | |||||||||
| XM_012617610.1 |
|
3.0 | PREDICTED: Gossypium raimondii protein trichome birefringence-like 5 (LOC105790165), transcript variant X3, mRNA | protein trichome birefringence-like 5(LOC105790165) | coding protein | psRNATarget | |||||||||
| XM_012617608.1 |
|
3.0 | PREDICTED: Gossypium raimondii protein trichome birefringence-like 5 (LOC105790165), transcript variant X1, mRNA | protein trichome birefringence-like 5(LOC105790165) | coding protein | psRNATarget |
| 1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |