ncRNA ID | gra-miR7493b |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr4:60486648-60486916 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 11 - UUGGAUUGUUAAAAGGUUAAUUGU - 34 |
Stem-loop(if miRNA) |
U        G          A      UG      C   CAU     A  UUCCAUCCAUAUAGA    G       -----------------AACUUUA  --  U -      AU  UUUAUUUUAUGUAAAAAACUAUUAA  AUUUUUUU UACGAUUAAC UUUUAA  AUUCAA CGC   AUUUU CA               UCAU CAUGUAA                        AA  UA U UUUUUA  UA                         U  |||||||| |||||||||| ||||||  |||||| |||   ||||| ||               |||| |||||||                        ||  || | ||||||  ||                         U  UAAAAAAA AUGUUAAUUG AAAAUU  UAGGUU GCG   UAAAA GU               AGUG GUACGUU                        UA  AA A UUAUAA  UU                         G -        A          G      GU      A   ACU     A  UAUAUUAACAUGAAC    G       AAAAACCUGGCUAAACUAUAGAAA  GU  - G      --  UUUCUCAUAUAAUUAUAAAUAAUUU |
Stem-loop sequence | UAUUUUUUUGUACGAUUAACAUUUUAAUGAUUCAACCGCCAUAUUUUACAUUCCAUCCAUAUAGAUCAUGCAUGUAAAACUUUAAAUAUUUUUUUAAUUAUUUAUUUUAUGUAAAAAACUAUUAAUUGUUUAAUAAAUAUUAAUAUACUCUUUUUAAUAUUGAAAUGAUAAAGAUAUCAAAUCGGUCCAAAAAUUGCAUGGGUGACAAGUACAAUUAUAUUGAAAAAUUCAGCGAUUGGAUUGUUAAAAGGUUAAUUGUAAAAAAAAAU |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |