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BaseInfo

ncRNA ID	gra-miR7484c
Species	Gossypium raimondii
Class	miRNA
Genome position	chr4:60386882-60387219 [-]
Reference genome	Graimondii2_0
Source	miRBase
Length	20
Mature sequence(if miRNA)	309 - AGAAGUCGAAUUGCAUUUUG - 328
Stem-loop(if miRNA)	C    -                           CCC    C    -    U  GC                          G   G    CG C     -G          C      U  C    A       ------     C CUAUACAUCAGCAUGAGGUAUACGUGGC  UCCU GUACUAGAAGUCGAAUUGCAUUUUGCC   UUUA UCAA AAAU GA  AAAUUAGUCCUUGUAUGUUAGAUCAA GAG AAAU  G CCUUU  GUUAAAAAUU UAUCCA UU UACU UUAAAAA      AUAGU C                            A  |||| |||||||||||||||||||||||||||   |||| |||| |||| ||  |||||||||||||||||||||||||| ||| ||||  | |||||  |||||||||| |||||| || |||| |||||||      ||||| |  GGGA CAUGAUCUUUAGUUUAAUGUAAAACGG   AGAU AGUU UUUA CU  UUUAAUUAGGGACAUGUAGUUUAGUU CUC UUUA  C GGAAA  UAAUUUUUAA GUAGGU AA AUGA AAUUUUU      ACCGA U                            U C    A                           ---    A    C    C  -A                          G   G    AA A     GA          A      C  U    C       GUCCAC     - UGCGUUAUUGGUCUGUCACGGUGCACCA
Stem-loop sequence	CUCCUGUACUAGAAGUCGAAUUGCAUUUUGCCCCCUUUACUCAAAAAUUGAGCAAAUUAGUCCUUGUAUGUUAGAUCAAGGAGGAAAUCGGCCCUUUGGUUAAAAAUUCUAUCCAUUUCUACUAUUAAAAAAUAGUCCCUAUACAUCAGCAUGAGGUAUACGUGGCAUACCACGUGGCACUGUCUGGUUAUUGCGUUAGCCACACCUGUUUUUAACAGUAUAACUGGAUGAAAUUUUUAAUAGAAAGGACAAAUUUGCUCGUUGAUUUGAUGUACAGGGAUUAAUUUAUCCAUUUCUUGAAUAGAGGCAAAAUGUAAUUUGAUUUCUAGUACAAGGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012617499.1	ncRNA:20   GUUUUACGUUAAGCUGAAGA   1   ||||||||||||=||||||| targets:707   CAAAAUGCAAUUUGACUUCU   726 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii transcription initiation factor TFIID subunit 7 (LOC105790091), transcript variant X1, mRNA	transcription initiation factor TFIID subunit 7(LOC105790091)	coding protein	psRNATarget
XM_012617940.1	ncRNA:20   GUUUUACGUUAAGCUGAAGA   1   |||||||||||||*|||||| targets:1321   CAAAAUGCAAUUCAACUUCU   1340 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii glyoxylate/succinic semialdehyde reductase 1-like (LOC105790362), transcript variant X2, mRNA	glyoxylate/succinic semialdehyde reductase 1-like(LOC105790362)	coding protein	psRNATarget
XM_012596150.1	ncRNA:20   GUUUUACGUUAAGCUGAAGA   1   =||||*||||||=||||||| targets:554   UAAAACGCAAUUUGACUUCU   573 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii sugar transporter ERD6-like 6 (LOC105773930), transcript variant X6, mRNA	sugar transporter ERD6-like 6(LOC105773930)	coding protein	psRNATarget
XM_012596149.1	ncRNA:20   GUUUUACGUUAAGCUGAAGA   1   =||||*||||||=||||||| targets:846   UAAAACGCAAUUUGACUUCU   865 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii sugar transporter ERD6-like 6 (LOC105773930), transcript variant X5, mRNA	sugar transporter ERD6-like 6(LOC105773930)	coding protein	psRNATarget
XM_012596148.1	ncRNA:20   GUUUUACGUUAAGCUGAAGA   1   =||||*||||||=||||||| targets:906   UAAAACGCAAUUUGACUUCU   925 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii sugar transporter ERD6-like 6 (LOC105773930), transcript variant X4, mRNA	sugar transporter ERD6-like 6(LOC105773930)	coding protein	psRNATarget
XM_012596145.1	ncRNA:20   GUUUUACGUUAAGCUGAAGA   1   =||||*||||||=||||||| targets:996   UAAAACGCAAUUUGACUUCU   1015 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii sugar transporter ERD6-like 6 (LOC105773930), transcript variant X1, mRNA	sugar transporter ERD6-like 6(LOC105773930)	coding protein	psRNATarget
XM_012596146.1	ncRNA:20   GUUUUACGUUAAGCUGAAGA   1   =||||*||||||=||||||| targets:1025   UAAAACGCAAUUUGACUUCU   1044 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii sugar transporter ERD6-like 6 (LOC105773930), transcript variant X2, mRNA	sugar transporter ERD6-like 6(LOC105773930)	coding protein	psRNATarget
XM_012621457.1	ncRNA:20   GUUUUACGUUAAGCUGAAGA   1   ||||||*|||||||||||*| targets:1196   CAAAAUACAAUUCGACUUGU   1215 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105792719 (LOC105792719), transcript variant X2, mRNA	uncharacterized LOC105792719(LOC105792719)	coding protein	psRNATarget
XM_012621456.1	ncRNA:20   GUUUUACGUUAAGCUGAAGA   1   ||||||*|||||||||||*| targets:1196   CAAAAUACAAUUCGACUUGU   1215 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105792719 (LOC105792719), transcript variant X1, mRNA	uncharacterized LOC105792719(LOC105792719)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).