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BaseInfo

ncRNA ID gra-miR7484c
Species Gossypium raimondii
Class miRNA
Genome position chr4:60386882-60387219 [-]
Reference genome Graimondii2_0
Source miRBase
Length 20
Mature sequence(if miRNA) 309 - AGAAGUCGAAUUGCAUUUUG - 328
Stem-loop(if miRNA) C    -                           CCC    C    -    U  GC                          G   G    CG C     -G          C      U  C    A       ------     C CUAUACAUCAGCAUGAGGUAUACGUGGC
 UCCU GUACUAGAAGUCGAAUUGCAUUUUGCC   UUUA UCAA AAAU GA  AAAUUAGUCCUUGUAUGUUAGAUCAA GAG AAAU  G CCUUU  GUUAAAAAUU UAUCCA UU UACU UUAAAAA      AUAGU C                            A
 |||| |||||||||||||||||||||||||||   |||| |||| |||| ||  |||||||||||||||||||||||||| ||| ||||  | |||||  |||||||||| |||||| || |||| |||||||      ||||| |
 GGGA CAUGAUCUUUAGUUUAAUGUAAAACGG   AGAU AGUU UUUA CU  UUUAAUUAGGGACAUGUAGUUUAGUU CUC UUUA  C GGAAA  UAAUUUUUAA GUAGGU AA AUGA AAUUUUU      ACCGA U                            U
C    A                           ---    A    C    C  -A                          G   G    AA A     GA          A      C  U    C       GUCCAC     - UGCGUUAUUGGUCUGUCACGGUGCACCA
Stem-loop sequence CUCCUGUACUAGAAGUCGAAUUGCAUUUUGCCCCCUUUACUCAAAAAUUGAGCAAAUUAGUCCUUGUAUGUUAGAUCAAGGAGGAAAUCGGCCCUUUGGUUAAAAAUUCUAUCCAUUUCUACUAUUAAAAAAUAGUCCCUAUACAUCAGCAUGAGGUAUACGUGGCAUACCACGUGGCACUGUCUGGUUAUUGCGUUAGCCACACCUGUUUUUAACAGUAUAACUGGAUGAAAUUUUUAAUAGAAAGGACAAAUUUGCUCGUUGAUUUGAUGUACAGGGAUUAAUUUAUCCAUUUCUUGAAUAGAGGCAAAAUGUAAUUUGAUUUCUAGUACAAGGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012617499.1
ncRNA:20   GUUUUACGUUAAGCUGAAGA   1
  ||||||||||||=|||||||
targets:707   CAAAAUGCAAUUUGACUUCU   726

1.5 PREDICTED: Gossypium raimondii transcription initiation factor TFIID subunit 7 (LOC105790091), transcript variant X1, mRNA transcription initiation factor TFIID subunit 7(LOC105790091) coding protein psRNATarget
XM_012617940.1
ncRNA:20   GUUUUACGUUAAGCUGAAGA   1
  |||||||||||||*||||||
targets:1321   CAAAAUGCAAUUCAACUUCU   1340

1.5 PREDICTED: Gossypium raimondii glyoxylate/succinic semialdehyde reductase 1-like (LOC105790362), transcript variant X2, mRNA glyoxylate/succinic semialdehyde reductase 1-like(LOC105790362) coding protein psRNATarget
XM_012596150.1
ncRNA:20   GUUUUACGUUAAGCUGAAGA   1
  =||||*||||||=|||||||
targets:554   UAAAACGCAAUUUGACUUCU   573

2.5 PREDICTED: Gossypium raimondii sugar transporter ERD6-like 6 (LOC105773930), transcript variant X6, mRNA sugar transporter ERD6-like 6(LOC105773930) coding protein psRNATarget
XM_012596149.1
ncRNA:20   GUUUUACGUUAAGCUGAAGA   1
  =||||*||||||=|||||||
targets:846   UAAAACGCAAUUUGACUUCU   865

2.5 PREDICTED: Gossypium raimondii sugar transporter ERD6-like 6 (LOC105773930), transcript variant X5, mRNA sugar transporter ERD6-like 6(LOC105773930) coding protein psRNATarget
XM_012596148.1
ncRNA:20   GUUUUACGUUAAGCUGAAGA   1
  =||||*||||||=|||||||
targets:906   UAAAACGCAAUUUGACUUCU   925

2.5 PREDICTED: Gossypium raimondii sugar transporter ERD6-like 6 (LOC105773930), transcript variant X4, mRNA sugar transporter ERD6-like 6(LOC105773930) coding protein psRNATarget
XM_012596145.1
ncRNA:20   GUUUUACGUUAAGCUGAAGA   1
  =||||*||||||=|||||||
targets:996   UAAAACGCAAUUUGACUUCU   1015

2.5 PREDICTED: Gossypium raimondii sugar transporter ERD6-like 6 (LOC105773930), transcript variant X1, mRNA sugar transporter ERD6-like 6(LOC105773930) coding protein psRNATarget
XM_012596146.1
ncRNA:20   GUUUUACGUUAAGCUGAAGA   1
  =||||*||||||=|||||||
targets:1025   UAAAACGCAAUUUGACUUCU   1044

2.5 PREDICTED: Gossypium raimondii sugar transporter ERD6-like 6 (LOC105773930), transcript variant X2, mRNA sugar transporter ERD6-like 6(LOC105773930) coding protein psRNATarget
XM_012621457.1
ncRNA:20   GUUUUACGUUAAGCUGAAGA   1
  ||||||*|||||||||||*|
targets:1196   CAAAAUACAAUUCGACUUGU   1215

2.5 PREDICTED: Gossypium raimondii uncharacterized LOC105792719 (LOC105792719), transcript variant X2, mRNA uncharacterized LOC105792719(LOC105792719) coding protein psRNATarget
XM_012621456.1
ncRNA:20   GUUUUACGUUAAGCUGAAGA   1
  ||||||*|||||||||||*|
targets:1196   CAAAAUACAAUUCGACUUGU   1215

2.5 PREDICTED: Gossypium raimondii uncharacterized LOC105792719 (LOC105792719), transcript variant X1, mRNA uncharacterized LOC105792719(LOC105792719) coding protein psRNATarget

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).