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BaseInfo

ncRNA ID gra-miR8735
Species Gossypium raimondii
Class miRNA
Genome position chr4:49758948-49759347 [-]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 11 - GGGGACAAUACCUUCGAUUGUUGG - 34
Stem-loop(if miRNA) G   A     -       C A                  CA   G               C UA     UC   C  A             ACA                A     U   UG             C   GA C               CAA        -       - - AUGGUUGUAGGUAAGGGUCUU
 ACU GAUUC CCAACAA C AAGGUAUUGUUCUCAUGU  GGG UUUGUCCCUAGCCUC G  GAGAG  GUG AC GUUCAUGGAGGGG   CCUCAGUUGGUGGUAC UGCAA ACU  GGAGAGGUGUUAG AUA  G GUGUGAAUAAUUAUU   CAACCUAA AGUGGUA C C                     A
 ||| ||||| ||||||| | ||||||||||||||||||  ||| ||||||||||||||| |  |||||  ||| || |||||||||||||   |||||||||||||||| ||||| |||  ||||||||||||| |||  | |||||||||||||||   |||||||| ||||||| | |                     U
 UGA CUGGG GGUUGUU G UUCCAUAACAGGGGUACA  CCC AAGCAGGGAUCGGAG C  CUCUU  UAC UG UAAGUAUCUCCCU   GGAGUUAACCACCAUG AUGUU UGA  UCUCUCCACAAUC UAU  C CACACUUAUUAAUAA   GUUGGAUU UCGCCCC C G                     A
-   C     A       A C                  AA   A               A GC     GU   A  C             CAC                G     C   GU             A   -A -               CUC        A       A U AGUUUGUUGGUUGGACUCCGA
Stem-loop sequence GACUAGAUUCCCAACAACCAAAGGUAUUGUUCUCAUGUCAGGGGUUUGUCCCUAGCCUCCGUAGAGAGUCGUGCACAGUUCAUGGAGGGGACACCUCAGUUGGUGGUACAUGCAAUACUUGGGAGAGGUGUUAGCAUAGAGCGUGUGAAUAAUUAUUCAACAACCUAAAGUGGUACCAUGGUUGUAGGUAAGGGUCUUAUAAGCCUCAGGUUGGUUGUUUGAGUCACCCCGCUAUUAGGUUGCUCAAUAAUUAUUCACACCAUAUACUAACACCUCUCUUGAGUCUUGUAGGUACCACCAAUUGAGGCACUCCCUCUAUGAAUCGUACAUUGUUCUCCGCAGAGGCUAGGGACGAAACCCAAACAUGGGGACAAUACCUUCGAUUGUUGGAGGGUCCAGU

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).