ncRNA ID | gra-miR8735 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr4:49758948-49759347 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 11 - GGGGACAAUACCUUCGAUUGUUGG - 34 |
Stem-loop(if miRNA) |
G   A     -       C A                  CA   G               C UA     UC   C  A             ACA                A     U   UG             C   GA C               CAA        -       - - AUGGUUGUAGGUAAGGGUCUU  ACU GAUUC CCAACAA C AAGGUAUUGUUCUCAUGU  GGG UUUGUCCCUAGCCUC G  GAGAG  GUG AC GUUCAUGGAGGGG   CCUCAGUUGGUGGUAC UGCAA ACU  GGAGAGGUGUUAG AUA  G GUGUGAAUAAUUAUU   CAACCUAA AGUGGUA C C                     A  ||| ||||| ||||||| | ||||||||||||||||||  ||| ||||||||||||||| |  |||||  ||| || |||||||||||||   |||||||||||||||| ||||| |||  ||||||||||||| |||  | |||||||||||||||   |||||||| ||||||| | |                     U  UGA CUGGG GGUUGUU G UUCCAUAACAGGGGUACA  CCC AAGCAGGGAUCGGAG C  CUCUU  UAC UG UAAGUAUCUCCCU   GGAGUUAACCACCAUG AUGUU UGA  UCUCUCCACAAUC UAU  C CACACUUAUUAAUAA   GUUGGAUU UCGCCCC C G                     A -   C     A       A C                  AA   A               A GC     GU   A  C             CAC                G     C   GU             A   -A -               CUC        A       A U AGUUUGUUGGUUGGACUCCGA |
Stem-loop sequence | GACUAGAUUCCCAACAACCAAAGGUAUUGUUCUCAUGUCAGGGGUUUGUCCCUAGCCUCCGUAGAGAGUCGUGCACAGUUCAUGGAGGGGACACCUCAGUUGGUGGUACAUGCAAUACUUGGGAGAGGUGUUAGCAUAGAGCGUGUGAAUAAUUAUUCAACAACCUAAAGUGGUACCAUGGUUGUAGGUAAGGGUCUUAUAAGCCUCAGGUUGGUUGUUUGAGUCACCCCGCUAUUAGGUUGCUCAAUAAUUAUUCACACCAUAUACUAACACCUCUCUUGAGUCUUGUAGGUACCACCAAUUGAGGCACUCCCUCUAUGAAUCGUACAUUGUUCUCCGCAGAGGCUAGGGACGAAACCCAAACAUGGGGACAAUACCUUCGAUUGUUGGAGGGUCCAGU |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |