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BaseInfo

ncRNA ID gra-miR8660
Species Gossypium raimondii
Class miRNA
Genome position chr4:34280607-34280986 [-]
Reference genome Graimondii2_0
Source miRBase
Length 23
Mature sequence(if miRNA) 11 - ACGAAAAAUUAAAUGGAGGGCUA - 33
Stem-loop(if miRNA) AAAAUCAA       A         AC    U   A        AU            A                   ---A    ----UGAAAAA      A          GACAUA      AAUUGCUACGUGGAUGCCAUGUCAACAAUUAAUUAGUUUUUAAAUUUUAAAAAAAUUCAAAAUAAUA
        UUUAGCC UUCAUUUAA  UUUC UCU UUUUAGCU  UAAACUUGUAUU UUUGUCAAAUCACCUAAAA    UAGA           GUUAAC UUGUUGAUGU      CAUGUG                                                                   U
        ||||||| |||||||||  |||| ||| ||||||||  |||||||||||| |||||||||||||||||||    ||||           |||||| ||||||||||      ||||||
        AAAUCGG AGGUAAAUU  AAAG AGA AAAAUCGA  AUUUGAACGUAA GAACAGUUUAGUGGGUUUU    AUCU           CAAUUG AACAACUGCG      UGUGGU                                                                   A
UUUAUAUA       G         AA    C   G        GU            C                   AUCG    UCAAUUACAAA      A          -UCAUA      GCAAACGUUAAUUGAUUAAUAAAAAUUUUAAAUUUUUAUGUAAAAUAUUAAAAAUUUUAUUAAAAAU
Stem-loop sequence AAAAUCAAUUUAGCCAUUCAUUUAAACUUUCUUCUAUUUUAGCUAUUAAACUUGUAUUAUUUGUCAAAUCACCUAAAAAUAGAUGAAAAAGUUAACAUUGUUGAUGUGACAUACAUGUGAAUUGCUACGUGGAUGCCAUGUCAACAAUUAAUUAGUUUUUAAAUUUUAAAAAAAUUCAAAAUAAUAUAUAAAAAUUAUUUUAAAAAUUAUAAAAUGUAUUUUUAAAUUUUAAAAAUAAUUAGUUAAUUGCAAACGUGGUGUAUACUGCGUCAACAAAGUUAACAAACAUUAACUUCUAGCUAUUUUGGGUGAUUUGACAAGCAAUGCAAGUUUAUGAGCUAAAAGAGACGAAAAAUUAAAUGGAGGGCUAAAAUAUAUUU

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).