ncRNA ID | gra-miR8660 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr4:34280607-34280986 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 23 |
Mature sequence(if miRNA) | 11 - ACGAAAAAUUAAAUGGAGGGCUA - 33 |
Stem-loop(if miRNA) |
AAAAUCAA       A         AC    U   A        AU            A                   ---A    ----UGAAAAA      A          GACAUA      AAUUGCUACGUGGAUGCCAUGUCAACAAUUAAUUAGUUUUUAAAUUUUAAAAAAAUUCAAAAUAAUA         UUUAGCC UUCAUUUAA  UUUC UCU UUUUAGCU  UAAACUUGUAUU UUUGUCAAAUCACCUAAAA    UAGA           GUUAAC UUGUUGAUGU      CAUGUG                                                                   U         ||||||| |||||||||  |||| ||| ||||||||  |||||||||||| |||||||||||||||||||    ||||           |||||| ||||||||||      ||||||         AAAUCGG AGGUAAAUU  AAAG AGA AAAAUCGA  AUUUGAACGUAA GAACAGUUUAGUGGGUUUU    AUCU           CAAUUG AACAACUGCG      UGUGGU                                                                   A UUUAUAUA       G         AA    C   G        GU            C                   AUCG    UCAAUUACAAA      A          -UCAUA      GCAAACGUUAAUUGAUUAAUAAAAAUUUUAAAUUUUUAUGUAAAAUAUUAAAAAUUUUAUUAAAAAU |
Stem-loop sequence | AAAAUCAAUUUAGCCAUUCAUUUAAACUUUCUUCUAUUUUAGCUAUUAAACUUGUAUUAUUUGUCAAAUCACCUAAAAAUAGAUGAAAAAGUUAACAUUGUUGAUGUGACAUACAUGUGAAUUGCUACGUGGAUGCCAUGUCAACAAUUAAUUAGUUUUUAAAUUUUAAAAAAAUUCAAAAUAAUAUAUAAAAAUUAUUUUAAAAAUUAUAAAAUGUAUUUUUAAAUUUUAAAAAUAAUUAGUUAAUUGCAAACGUGGUGUAUACUGCGUCAACAAAGUUAACAAACAUUAACUUCUAGCUAUUUUGGGUGAUUUGACAAGCAAUGCAAGUUUAUGAGCUAAAAGAGACGAAAAAUUAAAUGGAGGGCUAAAAUAUAUUU |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |