| ncRNA ID | gra-miR8781b |
| Species | Gossypium raimondii |
| Class | miRNA |
| Genome position | chr4:33302477-33302756 [-] |
| Reference genome | Graimondii2_0 |
| Source | miRBase |
| Length | 24 |
| Mature sequence(if miRNA) | 11 - UUUGAUUAGGAAGUUUGAGGAUCA - 34 |
| Stem-loop(if miRNA) |
U C G C AU UUAUU G AUCUAAUUC -- ACAUAACCCUUUUUUAUAUUUUUAAUAAAUUA UCUAUCAGUUUGGUCCUCAAACUUCCUAA CAAAGCUUUUAGCUUUUAAAAUAGA GCAUUUCACAU UAUUA UGUU UAUA UUGAAAUU GG U G ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |||| |||| |||||||| || | AGAUAGUCAAACUAGGAGUUUGAAGGAUU GUUUCGAAAGUCGAAAAUUUUGUCU UGUAAGGUGUA AUAAU AUAA AUAU AAUUUUAA AG A U - A G U AU ----U A ---AAUAAA UU AUAAAAAAUUACCACAAAUCAAUUAAAGAUCG |
| Stem-loop sequence | UUCUAUCAGUUUGGUCCUCAAACUUCCUAACCAAAGCUUUUAGCUUUUAAAAUAGAGGCAUUUCACAUCUAUUAAUUGUUUUAUUUAUAGUUGAAAUUAUCUAAUUCGGUACAUAACCCUUUUUUAUAUUUUUAAUAAAUUAGUGCUAGAAAUUAACUAAACACCAUUAAAAAAUAAUUGAAAAUAAAAUUUUAAAUAUAUAAUAUAUAAUAUAUGUGGAAUGUGUCUGUUUUAAAAGCUGAAAGCUUUGAUUAGGAAGUUUGAGGAUCAAACUGAUAGA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_012578652.1 |
|
2.5 | PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit C-9-like (LOC105804840), transcript variant X2, mRNA | nuclear transcription factor Y subunit C-9-like(LOC105804840) | coding protein | psRNATarget | |||||||||
| XM_012578654.1 |
|
2.5 | PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit C-9-like (LOC105804840), transcript variant X4, mRNA | nuclear transcription factor Y subunit C-9-like(LOC105804840) | coding protein | psRNATarget | |||||||||
| XM_012578653.1 |
|
2.5 | PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit C-9-like (LOC105804840), transcript variant X3, mRNA | nuclear transcription factor Y subunit C-9-like(LOC105804840) | coding protein | psRNATarget | |||||||||
| XM_012578651.1 |
|
2.5 | PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit C-9-like (LOC105804840), transcript variant X1, mRNA | nuclear transcription factor Y subunit C-9-like(LOC105804840) | coding protein | psRNATarget |
| 1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |