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BaseInfo

ncRNA ID gra-miR8772
Species Gossypium raimondii
Class miRNA
Genome position chr4:24684259-24684582 [+]
Reference genome Graimondii2_0
Source miRBase
Length 21
Mature sequence(if miRNA) 294 - UUGGACUGUGGCUACAUAUAG - 314
Stem-loop(if miRNA) A  U    CC  C      A     U      G    AC    C  U U --   UUGUUUUUCCCUCUCAAAACUAGCCUCUUAGGUAAGCGUGUGAACUGUCGAGAUCUGGAUGGAUCCAAGACACGUUACCACAGGUAGCGUCGUUUGUUUACACUUCUU
 UG CCCU  CU UAUGUA CCACA UCCAAU CUUA  UAGU GA G G  GGA                                                                                                            C
 || ||||  || |||||| ||||| |||||| ||||  |||| || | |  |||
 AC GGGA  GA AUACAU GGUGU AGGUUA GAAU  AUCA CU G A  GGG                                                                                                            U
C  U    AC  U      C     C      G    -A    U  G - CU   GAUCUGUUUGAUAAUGCGGGGAAUCGAGUGGAAGUAGAACAUCCUUCGAGUCGUCGAGGUAAAGUUGAAUGUACAGGUUUCUGAGCUGGAGGUCGAGUCGAGAGAUGG
Stem-loop sequence AUGUCCCUCCCUCUAUGUAACCACAUUCCAAUGCUUAACUAGUCGAUGUGGGAUUGUUUUUCCCUCUCAAAACUAGCCUCUUAGGUAAGCGUGUGAACUGUCGAGAUCUGGAUGGAUCCAAGACACGUUACCACAGGUAGCGUCGUUUGUUUACACUUCUUCUGGUAGAGAGCUGAGCUGGAGGUCGAGUCUUUGGACAUGUAAGUUGAAAUGGAGCUGCUGAGCUUCCUACAAGAUGAAGGUGAGCUAAGGGGCGUAAUAGUUUGUCUAGGGGUCAGGUCUACUAAUAAGGAUUGGACUGUGGCUACAUAUAGCAAGGGUCAC

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).