ncRNA ID | gra-miR8772 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr4:24684259-24684582 [+] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 294 - UUGGACUGUGGCUACAUAUAG - 314 |
Stem-loop(if miRNA) |
A  U    CC  C      A     U      G    AC    C  U U --   UUGUUUUUCCCUCUCAAAACUAGCCUCUUAGGUAAGCGUGUGAACUGUCGAGAUCUGGAUGGAUCCAAGACACGUUACCACAGGUAGCGUCGUUUGUUUACACUUCUU  UG CCCU  CU UAUGUA CCACA UCCAAU CUUA  UAGU GA G G  GGA                                                                                                            C  || ||||  || |||||| ||||| |||||| ||||  |||| || | |  |||  AC GGGA  GA AUACAU GGUGU AGGUUA GAAU  AUCA CU G A  GGG                                                                                                            U C  U    AC  U      C     C      G    -A    U  G - CU   GAUCUGUUUGAUAAUGCGGGGAAUCGAGUGGAAGUAGAACAUCCUUCGAGUCGUCGAGGUAAAGUUGAAUGUACAGGUUUCUGAGCUGGAGGUCGAGUCGAGAGAUGG |
Stem-loop sequence | AUGUCCCUCCCUCUAUGUAACCACAUUCCAAUGCUUAACUAGUCGAUGUGGGAUUGUUUUUCCCUCUCAAAACUAGCCUCUUAGGUAAGCGUGUGAACUGUCGAGAUCUGGAUGGAUCCAAGACACGUUACCACAGGUAGCGUCGUUUGUUUACACUUCUUCUGGUAGAGAGCUGAGCUGGAGGUCGAGUCUUUGGACAUGUAAGUUGAAAUGGAGCUGCUGAGCUUCCUACAAGAUGAAGGUGAGCUAAGGGGCGUAAUAGUUUGUCUAGGGGUCAGGUCUACUAAUAAGGAUUGGACUGUGGCUACAUAUAGCAAGGGUCAC |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |