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BaseInfo

ncRNA ID	gra-miR8777
Species	Gossypium raimondii
Class	miRNA
Genome position	chr4:12069781-12069920 [-]
Reference genome	Graimondii2_0
Source	miRBase
Length	20
Mature sequence(if miRNA)	111 - UUUCCAAUAGAAGAAUGACA - 130
Stem-loop(if miRNA)	-      --        C                  -C  A         C           AGUGUUACA  AUCUCU  UCAUUUUC AAUAGAAGAAUGACAAAU  GA UUUUUCUUC UAAUUUUUAGC         G  ||||||  |||||||| ||||||||||||||||||  || ||||||||| |||||||||||         G  UAGGGA  AGUAAAAG UUAUCUUCUUACUGUUUA  CU AAAAAGGAG AUUAAAAGUUG         A A      UA        -                  AC  A         U           AAAAAAAAG
Stem-loop sequence	AUCUCUUCAUUUUCCAAUAGAAGAAUGACAAAUCGAAUUUUUCUUCCUAAUUUUUAGCAGUGUUACAGGAGAAAAAAAAGUUGAAAAUUAUGAGGAAAAAAUCCAAUUUGUCAUUCUUCUAUUGAAAAUGAAUAGGGAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012632921.1	ncRNA:20   ACAGUAAGAAGAUAACCUUU   1   *||*|||||||||*|||||| targets:1288   AGUGAUUCUUCUACUGGAAA   1307 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii dual specificity tyrosine-phosphorylation-regulated kinase 4-like (LOC105801692), transcript variant X3, mRNA	dual specificity tyrosine-phosphorylation-regulated kinase 4-like(LOC105801692)	coding protein	psRNATarget
XM_012632920.1	ncRNA:20   ACAGUAAGAAGAUAACCUUU   1   *||*|||||||||*|||||| targets:2544   AGUGAUUCUUCUACUGGAAA   2563 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii dual specificity tyrosine-phosphorylation-regulated kinase 4-like (LOC105801692), transcript variant X2, mRNA	dual specificity tyrosine-phosphorylation-regulated kinase 4-like(LOC105801692)	coding protein	psRNATarget
XM_012632919.1	ncRNA:20   ACAGUAAGAAGAUAACCUUU   1   *||*|||||||||*|||||| targets:2561   AGUGAUUCUUCUACUGGAAA   2580 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii dual specificity tyrosine-phosphorylation-regulated kinase 4-like (LOC105801692), transcript variant X1, mRNA	dual specificity tyrosine-phosphorylation-regulated kinase 4-like(LOC105801692)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).