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BaseInfo

ncRNA ID gra-miR8758
Species Gossypium raimondii
Class miRNA
Genome position chr4:11590621-11590919 [+]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 11 - UGGGCUUCUUGCAAGAUGAAGGUA - 34
Stem-loop(if miRNA) -          U                 A    A  C     - AU  A       G     UG A            U     -A  A           UA          ----AA     G   AUAAUUUAGUAUGUCGGAGGCUGAA
 CUGGAGCUGC GGGCUUCUUGCAAGAUG AGGU AU UAGGG G  GU GGAGCUU UGUUU  G AUGUUCUCCGAU CUUAA  UG GCAAAGGGUGU  UGUAAUGGUG      GACAA UAA                         A
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 GACCUCGACG CCCGAAGGACGUUCUAC UCCA UG AUCCC C  UA CCUCGAA AUGAG  U UGCGAGAGGCUA GAAUU  AC CGUUUUCCACA  ACGUUACCAU      AACAA GAG                         G
U          U                 A    C  U     G CG  A       A     GU C            C     CA  -           UA          AUAACU     -   GAUACGGUGAACCUCUUGUUUCACC
Stem-loop sequence CUGGAGCUGCUGGGCUUCUUGCAAGAUGAAGGUAAUCUAGGGGAUGUAGGAGCUUGUGUUUUGGAAUGUUCUCCGAUUCUUAAAUGAGCAAAGGGUGUUAUGUAAUGGUGAAGACAAGUAAAUAAUUUAGUAUGUCGGAGGCUGAAAGCCACUUUGUUCUCCAAGUGGCAUAGGAGAACAAUCAAUAUACCAUUGCAAUACACCUUUUGCCAACUUAAGCAUCGGAGAGCGUCUUGGAGUAAAAGCUCCAAUGCCGCCCUAUGUCACCUACAUCUUGCAGGAAGCCCUGCAGCUCCAGU

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).