ncRNA ID | gra-miR8758 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr4:11590621-11590919 [+] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 11 - UGGGCUUCUUGCAAGAUGAAGGUA - 34 |
Stem-loop(if miRNA) |
-          U                 A    A  C     - AU  A       G     UG A            U     -A  A           UA          ----AA     G   AUAAUUUAGUAUGUCGGAGGCUGAA  CUGGAGCUGC GGGCUUCUUGCAAGAUG AGGU AU UAGGG G  GU GGAGCUU UGUUU  G AUGUUCUCCGAU CUUAA  UG GCAAAGGGUGU  UGUAAUGGUG      GACAA UAA                         A  |||||||||| ||||||||||||||||| |||| || ||||| |  || ||||||| |||||  | |||||||||||| |||||  || |||||||||||  ||||||||||      ||||| |||  GACCUCGACG CCCGAAGGACGUUCUAC UCCA UG AUCCC C  UA CCUCGAA AUGAG  U UGCGAGAGGCUA GAAUU  AC CGUUUUCCACA  ACGUUACCAU      AACAA GAG                         G U          U                 A    C  U     G CG  A       A     GU C            C     CA  -           UA          AUAACU     -   GAUACGGUGAACCUCUUGUUUCACC |
Stem-loop sequence | CUGGAGCUGCUGGGCUUCUUGCAAGAUGAAGGUAAUCUAGGGGAUGUAGGAGCUUGUGUUUUGGAAUGUUCUCCGAUUCUUAAAUGAGCAAAGGGUGUUAUGUAAUGGUGAAGACAAGUAAAUAAUUUAGUAUGUCGGAGGCUGAAAGCCACUUUGUUCUCCAAGUGGCAUAGGAGAACAAUCAAUAUACCAUUGCAAUACACCUUUUGCCAACUUAAGCAUCGGAGAGCGUCUUGGAGUAAAAGCUCCAAUGCCGCCCUAUGUCACCUACAUCUUGCAGGAAGCCCUGCAGCUCCAGU |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |