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BaseInfo

ncRNA ID	gra-miR8771f
Species	Gossypium raimondii
Class	miRNA
Genome position	chr4:7480874-7481090 [-]
Reference genome	Graimondii2_0
Source	miRBase
Length	23
Mature sequence(if miRNA)	11 - UUGGACAUCCAAGUUAGCAUUUA - 33
Stem-loop(if miRNA)	C         U       CU     A     A        C        -G            UAAUUU         GAAAAUUUUAAAUUAAUUACACCUUGAACUAG  AAAUGAGUU UAAAUGC  ACUUG AUGUC AAUUGGGA GAGAAUAA  UUUUUAAUUAAA      UAAUUAAUU                                A  ||||||||| |||||||  ||||| ||||| |||||||| ||||||||  ||||||||||||      |||||||||  UUUACUCAA AUUUACG  UGAAC UACAG UUGAUCCU CUUUUAUU  AAAAGUUAGUUU      CUUUUCUUU                                A -         U       AU     C     G        A        AA            ---UAC         UGAUUUUCUUUUUCCUCUGUUUACCAAAAGAA
Stem-loop sequence	CAAAUGAGUUUUAAAUGCCUACUUGAAUGUCAAAUUGGGACGAGAAUAAGUUUUUAAUUAAAUAAUUUUAAUUAAUUGAAAAUUUUAAAUUAAUUACACCUUGAACUAGAAAAGAAAACCAUUUGUCUCCUUUUUCUUUUAGUUUUCUUUUCCAUUUUGAUUGAAAAAAUUAUUUUCAUCCUAGUUGGACAUCCAAGUUAGCAUUUAUAACUCAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012582924.1	ncRNA:23   AUUUACGAUUGAACCUACAGGUU   1   |||||||*|||||||||||=||| targets:3563   UAAAUGCCAACUUGGAUGUUCAA   3585 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii putative pentatricopeptide repeat-containing protein At2g02150 (LOC105764382), transcript variant X3, mRNA	putative pentatricopeptide repeat-containing protein At2g02150(LOC105764382)	coding protein	psRNATarget
XM_012582923.1	ncRNA:23   AUUUACGAUUGAACCUACAGGUU   1   |||||||*|||||||||||=||| targets:3626   UAAAUGCCAACUUGGAUGUUCAA   3648 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii putative pentatricopeptide repeat-containing protein At2g02150 (LOC105764382), transcript variant X2, mRNA	putative pentatricopeptide repeat-containing protein At2g02150(LOC105764382)	coding protein	psRNATarget
XM_012582925.1	ncRNA:23   AUUUACGAUUGAACCUACAGGUU   1   |||||||*|||||||||||=||| targets:3716   UAAAUGCCAACUUGGAUGUUCAA   3738 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii putative pentatricopeptide repeat-containing protein At2g02150 (LOC105764382), transcript variant X4, mRNA	putative pentatricopeptide repeat-containing protein At2g02150(LOC105764382)	coding protein	psRNATarget
XM_012582922.1	ncRNA:23   AUUUACGAUUGAACCUACAGGUU   1   |||||||*|||||||||||=||| targets:3827   UAAAUGCCAACUUGGAUGUUCAA   3849 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii putative pentatricopeptide repeat-containing protein At2g02150 (LOC105764382), transcript variant X1, mRNA	putative pentatricopeptide repeat-containing protein At2g02150(LOC105764382)	coding protein	psRNATarget
XM_012628940.1	ncRNA:23   AUUUACGAUUGAACCUACAGGUU   1   |||||||*|||||||||||||*| targets:40   UAAAUGCCAACUUGGAUGUCCUA   62 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii QWRF motif-containing protein 8-like (LOC105798736), transcript variant X5, mRNA	QWRF motif-containing protein 8-like(LOC105798736)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).