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BaseInfo

ncRNA ID gra-miR8655
Species Gossypium raimondii
Class miRNA
Genome position chr4:4325745-4326122 [+]
Reference genome Graimondii2_0
Source miRBase
Length 21
Mature sequence(if miRNA) 348 - AUAUGUUCUGAUUAUAUCUGU - 368
Stem-loop(if miRNA) U    ----UC   A        U        -----------------------U     --   GUU AUCAAAUUGUAAAUAUAUUUAUACUUAUGGUGUAGAAAGUGCACAUUUAUCUUUAACAUGUACCUUGUGGAGGUUUCUAUUAUUAAACAACCAUGGGGUUGUUUUUUUCCCACCAGCCAAGACGAAGGGUUUAA
 GUCA      ACA AUAUGAUC GAACAUAU                        AAAAA  CAC   G                                                                                                                                      U
 ||||      ||| |||||||| ||||||||                        |||||  |||   |                                                                                                                                      A
 UAGU      UGU UAUAUUAG CUUGUAUA                        UUUUG  AAU   U                                                                                                                                      G
-    UUUUCU   C        U        UUAUUUAAAUUAUUAUUUUAUUAU     GA   --- UUUUAAUUGUUAAAGUGUAUUUUUUUUGUGAGAAUUUAAUAAGUAACAUACUGACCAAACUGAAAAAGGGGUUUAUAAAGUUAAGAUGAAGUUAAAUUAAAUCCUAGUUUAACAGUCUAAAGUAUUGGAUUUUU
Stem-loop sequence UGUCAUCACAAAUAUGAUCUGAACAUAUUAAAAACACGUUGAUCAAAUUGUAAAUAUAUUUAUACUUAUGGUGUAGAAAGUGCACAUUUAUCUUUAACAUGUACCUUGUGGAGGUUUCUAUUAUUAAACAACCAUGGGGUUGUUUUUUUCCCACCAGCCAAGACGAAGGGUUUAAUAGUUUUUAGGUUAUGAAAUCUGACAAUUUGAUCCUAAAUUAAAUUGAAGUAGAAUUGAAAUAUUUGGGGAAAAAGUCAAACCAGUCAUACAAUGAAUAAUUUAAGAGUGUUUUUUUUAUGUGAAAUUGUUAAUUUUUUAAAGGUUUUUAUUAUUUUAUUAUUAAAUUUAUUAUAUGUUCUGAUUAUAUCUGUUCUUUUUGAU

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).