ncRNA ID | gra-miR8655 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr4:4325745-4326122 [+] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 348 - AUAUGUUCUGAUUAUAUCUGU - 368 |
Stem-loop(if miRNA) |
U    ----UC   A        U        -----------------------U     --   GUU AUCAAAUUGUAAAUAUAUUUAUACUUAUGGUGUAGAAAGUGCACAUUUAUCUUUAACAUGUACCUUGUGGAGGUUUCUAUUAUUAAACAACCAUGGGGUUGUUUUUUUCCCACCAGCCAAGACGAAGGGUUUAA  GUCA      ACA AUAUGAUC GAACAUAU                        AAAAA  CAC   G                                                                                                                                      U  ||||      ||| |||||||| ||||||||                        |||||  |||   |                                                                                                                                      A  UAGU      UGU UAUAUUAG CUUGUAUA                        UUUUG  AAU   U                                                                                                                                      G -    UUUUCU   C        U        UUAUUUAAAUUAUUAUUUUAUUAU     GA   --- UUUUAAUUGUUAAAGUGUAUUUUUUUUGUGAGAAUUUAAUAAGUAACAUACUGACCAAACUGAAAAAGGGGUUUAUAAAGUUAAGAUGAAGUUAAAUUAAAUCCUAGUUUAACAGUCUAAAGUAUUGGAUUUUU |
Stem-loop sequence | UGUCAUCACAAAUAUGAUCUGAACAUAUUAAAAACACGUUGAUCAAAUUGUAAAUAUAUUUAUACUUAUGGUGUAGAAAGUGCACAUUUAUCUUUAACAUGUACCUUGUGGAGGUUUCUAUUAUUAAACAACCAUGGGGUUGUUUUUUUCCCACCAGCCAAGACGAAGGGUUUAAUAGUUUUUAGGUUAUGAAAUCUGACAAUUUGAUCCUAAAUUAAAUUGAAGUAGAAUUGAAAUAUUUGGGGAAAAAGUCAAACCAGUCAUACAAUGAAUAAUUUAAGAGUGUUUUUUUUAUGUGAAAUUGUUAAUUUUUUAAAGGUUUUUAUUAUUUUAUUAUUAAAUUUAUUAUAUGUUCUGAUUAUAUCUGUUCUUUUUGAU |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |