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BaseInfo

ncRNA ID	novel_osa_miR13375
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:3784078-3784184 [+]
Reference genome	IRGSP-1.0
Source	SRR5351738
Length	20
Mature sequence(if miRNA)	88 - UAAACUCCCAAUCCUCUUCC - 107
Stem-loop(if miRNA)	--   -                G  AU     AAAUAUU         AAAUCAA   GAG GGAUUGGGAGUUUAGA GA  GGGAA       UGGGAUUAA       A   ||| |||||||||||||||| ||  |||||       |||||||||   UUC CCUAACCCUCAAAUCU CU  CCCUU       ACUCUAGUU       U CC   U                A  --     AACUACC         GUACAAU
Stem-loop sequence	GAGGGAUUGGGAGUUUAGAGGAAUGGGAAAAAUAUUUGGGAUUAAAAAUCAAAUUAACAUGUUGAUCUCACCAUCAAUUCCCUCAUCUAAACUCCCAAUCCUCUUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK102177.1	ncRNA:20   CCUU-CUCCUAACCCUCAAAU   1   ||||-|=|||||||||||||| targets:729   GGAAAGGGGAUUGGGAGUUUA   749 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J033086L12, full insert sequence	NA	coding protein	psRNATarget
AK111492.1	ncRNA:20   CCUUCUCCUAACCCUCAAAU   1   |||||=*||||||||||||| targets:218   GGAAGGAGAUUGGGAGUUUA   237 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013000B10, full insert sequence	NA	coding protein	psRNATarget
XM_015773009.1	ncRNA:20   CCUUCUCCUAACCCUCAAAU   1   |||||=*||||||||||||| targets:322   GGAAGGAGAUUGGGAGUUUA   341 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group RING finger protein 222 (LOC4333163), transcript variant X2, mRNA	RING finger protein 222(LOC4333163)	coding protein	psRNATarget
AK288828.1	ncRNA:20   CCUUCUCCUAACCCUCAAAU   1   |||||=||||*||||||||| targets:62   GGAAGGGGAUAGGGAGUUUA   81 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090073J24, full insert sequence	NA	coding protein	psRNATarget
XM_015769036.1	ncRNA:20   CCUUCUCCUAACCCUCAAAU   1   **|=|||||||||||||||| targets:477   CUAGGAGGAUUGGGAGUUUA   496 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280016 (LOC107280016), mRNA	uncharacterized LOC107280016(LOC107280016)	coding protein	psRNATarget
AK119768.1	ncRNA:20   CCUUCUCCUAACCCUCAAAU   1   **||||*||||||||||||| targets:121   UAAAGAUGAUUGGGAGUUUA   140 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-172-E11, full insert sequence	NA	coding protein	psRNATarget
XM_015788723.1	ncRNA:20   CCUUCUCCUAACCCUCAAAU   1   **||||*||||||||||||| targets:1748   UAAAGAUGAUUGGGAGUUUA   1767 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group condensin complex subunit 3 (LOC9269856), transcript variant X2, mRNA	condensin complex subunit 3(LOC9269856)	coding protein	psRNATarget
XM_015788722.1	ncRNA:20   CCUUCUCCUAACCCUCAAAU   1   **||||*||||||||||||| targets:1751   UAAAGAUGAUUGGGAGUUUA   1770 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group condensin complex subunit 3 (LOC9269856), transcript variant X1, mRNA	condensin complex subunit 3(LOC9269856)	coding protein	psRNATarget
AK072523.1	ncRNA:20   CCUUCUCCUAACCCUCAAAU   1   **|=||*||||||||||||| targets:2006   AAAGGAAGAUUGGGAGUUUA   2025 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023132D06, full insert sequence	NA	coding protein	psRNATarget
XM_015761120.1	ncRNA:20   CCUUCUCCUAACCCUCAAAU   1   **|=||*||||||||||||| targets:1017   AAAGGAAGAUUGGGAGUUUA   1036 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group putative receptor-like protein kinase At3g47110 (LOC107279442), mRNA	putative receptor-like protein kinase At3g47110(LOC107279442)	coding protein	psRNATarget
XM_015763640.1	ncRNA:20   CCUUCUCCUAACCCUCAAAU   1   **=|||*||||||||||||| targets:1100   UAGAGAAGAUUGGGAGUUUA   1119 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g52620 (LOC9268419), mRNA	pentatricopeptide repeat-containing protein At1g52620(LOC9268419)	coding protein	psRNATarget
XM_015759894.1	ncRNA:20   CCUUCUCCUAACCCUCAAAU   1   **|=||*||||||||||||| targets:2301   AAAGGAAGAUUGGGAGUUUA   2320 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group LRR receptor-like serine/threonine-protein kinase EFR (LOC9268179), transcript variant X2, mRNA	LRR receptor-like serine/threonine-protein kinase EFR(LOC9268179)	coding protein	psRNATarget
XM_015761782.1	ncRNA:20   CCUUCUCCUAACCCUCAAAU   1   **=|||*||||||||||||| targets:966   UAGAGAAGAUUGGGAGUUUA   985 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g52620 (LOC9267287), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At1g52620(LOC9267287)	coding protein	psRNATarget
XM_015761779.1	ncRNA:20   CCUUCUCCUAACCCUCAAAU   1   **=|||*||||||||||||| targets:966   UAGAGAAGAUUGGGAGUUUA   985 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g52620 (LOC9267287), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At1g52620(LOC9267287)	coding protein	psRNATarget