Search result

BaseInfo

ncRNA ID	gra-miR8743a
Species	Gossypium raimondii
Class	miRNA
Genome position	chr4:2016221-2016424 [-]
Reference genome	Graimondii2_0
Source	miRBase
Length	24
Mature sequence(if miRNA)	171 - UAUGAAAAGUUAUAAAAUGGUCAU - 194
Stem-loop(if miRNA)	A     -------------  ACUAUGAAAAGUUAUAAAAUGGUCAUCCAAUUAUUUAAUUUUAUCUUUUGGUCAUCCAAUUGUCUUGAAAUUUUUGGUGUUUUCAU  UCACU             CU                                                                                      U  |||||             ||                                                                                      U  AGUGG             AG                                                                                      U A     AUACAAGAAAAAA  AAAAAACUAAUAGGUUGUUACUUUUUAAUGUUUUACUAAUGGAUUAAUAAAUUAAAACAGAAAAACUAGUAAUCGACUGAUUUCAU
Stem-loop sequence	AUCACUCUACUAUGAAAAGUUAUAAAAUGGUCAUCCAAUUAUUUAAUUUUAUCUUUUGGUCAUCCAAUUGUCUUGAAAUUUUUGGUGUUUUCAUUUUUACUUUAGUCAGCUAAUGAUCAAAAAGACAAAAUUAAAUAAUUAGGUAAUCAUUUUGUAAUUUUUCAUUGUUGGAUAAUCAAAAAAGAAAAAAAGAACAUAGGUGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012581889.1	ncRNA:24   UACUGGUAAAAUAUUGAAAAGUAU   1   ||-|=|||||||||||||||=||| targets:919   AU-AUCAUUUUAUAACUUUUUAUA   941 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii glucosidase 2 subunit beta (LOC105763620), transcript variant X1, mRNA	glucosidase 2 subunit beta(LOC105763620)	coding protein	psRNATarget
XM_012581895.1	ncRNA:24   UACUGGUAAAAUAUUGAAAAGUAU   1   ||-|=|||||||||||||||=||| targets:938   AU-AUCAUUUUAUAACUUUUUAUA   960 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii glucosidase 2 subunit beta (LOC105763620), transcript variant X7, mRNA	glucosidase 2 subunit beta(LOC105763620)	coding protein	psRNATarget
XM_012595148.1	ncRNA:24   UACUGGUAAAAUAUUGAAAAGUAU   1   =||||||||||=|||||||||||= targets:347   GUGACCAUUUUGUAACUUUUCAUG   370 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii probable phosphopantothenoylcysteine decarboxylase (LOC105773354), mRNA	probable phosphopantothenoylcysteine decarboxylase(LOC105773354)	coding protein	psRNATarget
XM_012613954.1	ncRNA:24   UACUGGUAAAAUAUUGAAAAGUAU   1   =||||||||*|=|||||||||||| targets:50   GUGACCAUUAUGUAACUUUUCAUA   73 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105787523 (LOC105787523), mRNA	uncharacterized LOC105787523(LOC105787523)	coding protein	psRNATarget
XM_012619026.1	ncRNA:24   UACUGGUAAAAUAUUGAAAAGUAU   1   *|*||*|||||||||||||*|||| targets:727   UUCACAAUUUUAUAACUUUGCAUA   750 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii 40S ribosomal protein S15a-1-like (LOC105791111), mRNA	40S ribosomal protein S15a-1-like(LOC105791111)	coding protein	psRNATarget
XM_012610909.1	ncRNA:24   UACUGGUAAAAUAUUGAAAAGUAU   1   *|*||*|||||||||||||*|||| targets:545   UUCACAAUUUUAUAACUUUGCAUA   568 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii 40S ribosomal protein S15a-like (LOC105784979), mRNA	40S ribosomal protein S15a-like(LOC105784979)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).