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BaseInfo

ncRNA ID	gra-miR8641
Species	Gossypium raimondii
Class	miRNA
Genome position	chr4:755210-755406 [-]
Reference genome	Graimondii2_0
Source	miRBase
Length	24
Mature sequence(if miRNA)	166 - UUUUUACUUUGGGACACUGAUGGC - 189
Stem-loop(if miRNA)	--UUUU                             A  -ACCUUAAAAAAAUUAAAUACAC   - G  AACCAA AAUGUUCCAAAAUUAAAAAAAAAAUAC       UUUUUUUUUACUUUGGGACACUGAUGGCU GG                       UGG U CC      C                           A       ||||||||||||||||||||||||||||| ||                       ||| | ||      |                           U       AAAAAAAAAUGAAACCCUGUGAUUACCGG CC                       AUG A CC      G                           U UUCUGU                             -  AUAAUCACAUAAAUUUUAAAAAA   U -  ------ GUCGUGGUUCAUAUUAAAAGCCGAGGG
Stem-loop sequence	UUUUUUUUUUUUUACUUUGGGACACUGAUGGCUAGGACCUUAAAAAAAUUAAAUACACUGGUGCCAACCAACAAUGUUCCAAAAUUAAAAAAAAAAUACAUUGGGAGCCGAAAAUUAUACUUGGUGCUGGCCAUGUAAAAAAAUUUUAAAUACACUAAUACCGGCCAUUAGUGUCCCAAAGUAAAAAAAAAUGUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012599085.1	ncRNA:24   CGGUAGUCACAGGGUUUCAUUUUU   1   *=|*||*|||||||||=||||||| targets:769   AUCUUCUGUGUCCCAAGGUAAAAA   792 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105776438 (LOC105776438), transcript variant X5, mRNA	uncharacterized LOC105776438(LOC105776438)	coding protein	psRNATarget
XM_012599083.1	ncRNA:24   CGGUAGUCACAGGGUUUCAUUUUU   1   *=|*||*|||||||||=||||||| targets:1752   AUCUUCUGUGUCCCAAGGUAAAAA   1775 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105776438 (LOC105776438), transcript variant X3, mRNA	uncharacterized LOC105776438(LOC105776438)	coding protein	psRNATarget
XM_012599082.1	ncRNA:24   CGGUAGUCACAGGGUUUCAUUUUU   1   *=|*||*|||||||||=||||||| targets:1644   AUCUUCUGUGUCCCAAGGUAAAAA   1667 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105776438 (LOC105776438), transcript variant X2, mRNA	uncharacterized LOC105776438(LOC105776438)	coding protein	psRNATarget
XM_012599084.1	ncRNA:24   CGGUAGUCACAGGGUUUCAUUUUU   1   *=|*||*|||||||||=||||||| targets:1752   AUCUUCUGUGUCCCAAGGUAAAAA   1775 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105776438 (LOC105776438), transcript variant X4, mRNA	uncharacterized LOC105776438(LOC105776438)	coding protein	psRNATarget
XM_012599086.1	ncRNA:24   CGGUAGUCACAGGGUUUCAUUUUU   1   *=|*||*|||||||||=||||||| targets:1735   AUCUUCUGUGUCCCAAGGUAAAAA   1758 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105776438 (LOC105776438), transcript variant X6, mRNA	uncharacterized LOC105776438(LOC105776438)	coding protein	psRNATarget
XM_012599081.1	ncRNA:24   CGGUAGUCACAGGGUUUCAUUUUU   1   *=|*||*|||||||||=||||||| targets:1751   AUCUUCUGUGUCCCAAGGUAAAAA   1774 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105776438 (LOC105776438), transcript variant X1, mRNA	uncharacterized LOC105776438(LOC105776438)	coding protein	psRNATarget
XM_012612895.1	ncRNA:24   CGGUAGUCACAGGGUUUCAUUUUU   1   ***|||||*||*|||||||||||| targets:842   AAAAUCAGCGUGCCAAAGUAAAAA   865 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii zinc finger CCCH domain-containing protein 11-like (LOC105786450), mRNA	zinc finger CCCH domain-containing protein 11-like(LOC105786450)	coding protein	psRNATarget
XM_012590528.1	ncRNA:24   CGGUAGU-CACAGGGUUUCAUUUUU   1   ***||||-|*||||||||||||||| targets:279   AAAAUCAAGGGUCCCAAAGUAAAAA   303 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii uncharacterized LOC105769714 (LOC105769714), mRNA	uncharacterized LOC105769714(LOC105769714)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).