| ncRNA ID | gra-miR7484k |
| Species | Gossypium raimondii |
| Class | miRNA |
| Genome position | chr4:721204-721436 [+] |
| Reference genome | Graimondii2_0 |
| Source | miRBase |
| Length | 24 |
| Mature sequence(if miRNA) | 11 - UUUAUACAUUAGAUCAAAGAGCAA - 34 |
| Stem-loop(if miRNA) |
- A CA C A ---- C --A ACG A -----A ACUAUAU AGCAUGAGUACACGGAACAUA CAAAUU GUCUUUAUA UUAGAU AAAGAGCAAAUU AUC CUGUUAAAAAUU UAUCC UGUAU GUUA AAAC GGUU CUC C |||||| ||||||||| |||||| |||||||||||| ||| |||||||||||| ||||| ||||| |||| |||| |||| ||| C GUUUAA UAGGGAUAU GAUCUG UUUCUCGUUUAA UAG GACAAUUUUUAA GUAGG ACAUG CAAU UUUG CCGA UGU A U C AC A C UAAA A AAA --A C ACUUUA ------C CUUAUUAGUAUAUUACUGUAC |
| Stem-loop sequence | CAAAUUAGUCUUUAUACAUUAGAUCAAAGAGCAAAUUAAUCCUGUUAAAAAUUCUAUCCAUGUAUACGGUUAAAAACAGGUUACUAUAUCUCAGCAUGAGUACACGGAACAUACCACAUGUCAUUAUAUGAUUAUUCUGUCAGCCAUUUCAGUUUCUAACAGUACAAAAGGAUGAAAUUUUUAACAGAAAUGAUCAAUUUGCUCUUUAGUCUAGCAUAUAGGGAUCAAUUUGU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_012612608.1 |
|
2.5 | PREDICTED: Gossypium raimondii uncharacterized LOC105786248 (LOC105786248), mRNA | uncharacterized LOC105786248(LOC105786248) | coding protein | psRNATarget | |||||||||
| XM_012582316.1 |
|
2.5 | PREDICTED: Gossypium raimondii E3 ubiquitin-protein ligase SINAT3 (LOC105763908), mRNA | E3 ubiquitin-protein ligase SINAT3(LOC105763908) | coding protein | psRNATarget | |||||||||
| XM_012625064.1 |
|
2.5 | PREDICTED: Gossypium raimondii uncharacterized protein At1g04910-like (LOC105795444), mRNA | uncharacterized protein At1g04910-like(LOC105795444) | coding protein | psRNATarget |
| 1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |