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BaseInfo

ncRNA ID	gra-miR7484i
Species	Gossypium raimondii
Class	miRNA
Genome position	chr4:704522-704632 [-]
Reference genome	Graimondii2_0
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UUUAACCGUAGAAAUGGAUGA - 31
Stem-loop(if miRNA)	A         C      A      UA           -  -------      A GAA  UUAAAAAUU CAUCCA UUCUAC  UUAAAAGUUGG CU       UGACUG C   U  ||||||||| |||||| ||||||  ||||||||||| ||       |||||| |   A  GAUUUUUAA GUAGGU AAGAUG  AAUUUUUAACC GG       AUUGAC G   A C         A      A      CC           A  GGUACAC      A AAC
Stem-loop sequence	AUUAAAAAUUCCAUCCAAUUCUACUAUUAAAAGUUGGCUUGACUGACGAAUAACAAGACAGUUACACAUGGGGACCAAUUUUUAACCGUAGAAAUGGAUGAAAUUUUUAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012625918.1	ncRNA:21   AGUAGGUAAAGAUGCCAAUUU   1   ||||||||||=|||||||||| targets:1775   UCAUCCAUUUUUACGGUUAAA   1795 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii cytochrome P450 71D10-like (LOC105796302), mRNA	cytochrome P450 71D10-like(LOC105796302)	coding protein	psRNATarget
XM_012582272.1	ncRNA:21   AGUAGGUAAAGAUGCCAAUUU   1   |=|||=||||=|||||||||| targets:1296   UUAUCUAUUUUUACGGUUAAA   1316 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii delta(8)-fatty-acid desaturase-like (LOC105763878), transcript variant X2, mRNA	delta(8)-fatty-acid desaturase-like(LOC105763878)	coding protein	psRNATarget
XM_012582271.1	ncRNA:21   AGUAGGUAAAGAUGCCAAUUU   1   |=|||=||||=|||||||||| targets:1296   UUAUCUAUUUUUACGGUUAAA   1316 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii delta(8)-fatty-acid desaturase-like (LOC105763878), transcript variant X1, mRNA	delta(8)-fatty-acid desaturase-like(LOC105763878)	coding protein	psRNATarget
XM_012625335.1	ncRNA:21   AGUAGGUAAAGAUGCCAAUUU   1   ||||=|||||||||*|||||| targets:3312   UCAUUCAUUUCUACAGUUAAA   3332 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii auxin-binding protein ABP19a-like (LOC105795634), mRNA	auxin-binding protein ABP19a-like(LOC105795634)	coding protein	psRNATarget
XM_012628326.1	ncRNA:21   AGUAGGUAAAGAUGCCAAUUU   1   **|||=||||||||||*|||| targets:1917   AAAUCUAUUUCUACGGAUAAA   1937 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii pentatricopeptide repeat-containing protein At1g33350 (LOC105798303), mRNA	pentatricopeptide repeat-containing protein At1g33350(LOC105798303)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).