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BaseInfo

ncRNA ID	ath-miR5628
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr5:17985850-17985995 [+]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	32 - GAAAUAGCGAAGAUAUGAUUA - 52
Stem-loop(if miRNA)	G               C             AG      C                        -------    U  GAACGGUCGAGAUGA UAACCGAUAUUAU  AAAUAG GAAGAUAUGAUUAUAGAAGAAUCA       ACCA C  ||||||||||||||| |||||||||||||  |||||| ||||||||||||||||||||||||       |||| U  CUUGCCAGCUCUACU AUUGGUUAUAAUA  UUUAUU CUUCUAUACUAAUAUCUUUUUAGU       UGGU U G               A             CU      A                        UCUUCUU    U
Stem-loop sequence	GGAACGGUCGAGAUGACUAACCGAUAUUAUAGAAAUAGCGAAGAUAUGAUUAUAGAAGAAUCAACCAUCUUUUGGUUUCUUCUUGAUUUUUCUAUAAUCAUAUCUUCAUUAUUUUCAUAAUAUUGGUUAAUCAUCUCGACCGUUCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001335846.1	ncRNA:21   AUUAGUAUAGAAGCGAUAAAG   1   *|*|||*|||||||||||||| targets:185   GAUUCACAUCUUCGCUAUUUC   205 Target Full Sequence	2.0	Arabidopsis thaliana cyclin delta-3 mRNA	cyclin delta-3(AT2G23370)	coding protein	psRNATarget

Reference

1	PMID:21940835 "High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012).