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BaseInfo

ncRNA ID	gra-miR8785
Species	Gossypium raimondii
Class	miRNA
Genome position	chr3:45620696-45620897 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	21
Mature sequence(if miRNA)	172 - UUUUACAGCAGCUACAUCCAU - 192
Stem-loop(if miRNA)	GAGAAA            U                        UG  AU  G -  AUGAUAAGAGCAUCAGCAUCAUGAAUUGAUCAGGAUACGAUGAAUA       AUGAAUGGAUGU GCUGCUGUAAAAUAAAAAGAUUUC  GA  CU U UA                                              A       |||||||||||| ||||||||||||||||||||||||  ||  || | ||       UACUUACCUACA CGACGACAUUUUAUUUUUCUAAAG  CG  UG U UU                                              U GAAUAG            U                        UA  --  - U  UGGUAGUUUGAUUUAAUAAGUAGCAUAUGGCAAUGUCUCCUCUAUU
Stem-loop sequence	GAGAAAAUGAAUGGAUGUUGCUGCUGUAAAAUAAAAAGAUUUCUGGAAUCUGUUAAUGAUAAGAGCAUCAGCAUCAUGAAUUGAUCAGGAUACGAUGAAUAAUUUAUCUCCUCUGUAACGGUAUACGAUGAAUAAUUUAGUUUGAUGGUUUUUGUGCAUGAAAUCUUUUUAUUUUACAGCAGCUACAUCCAUUCAUGAUAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012624880.1	ncRNA:21   UACCUACAUCGACGACAUUUU   1   |||||**|||||||||||||* targets:816   AUGGAAAUAGCUGCUGUAAAU   836 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii transcription factor bHLH63 (LOC105795311), transcript variant X3, mRNA	transcription factor bHLH63(LOC105795311)	coding protein	psRNATarget
XM_012624879.1	ncRNA:21   UACCUACAUCGACGACAUUUU   1   |||||**|||||||||||||* targets:951   AUGGAAAUAGCUGCUGUAAAU   971 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii transcription factor bHLH63 (LOC105795311), transcript variant X2, mRNA	transcription factor bHLH63(LOC105795311)	coding protein	psRNATarget
XM_012624878.1	ncRNA:21   UACCUACAUCGACGACAUUUU   1   |||||**|||||||||||||* targets:951   AUGGAAAUAGCUGCUGUAAAU   971 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii transcription factor bHLH63 (LOC105795311), transcript variant X1, mRNA	transcription factor bHLH63(LOC105795311)	coding protein	psRNATarget
XM_012598017.1	ncRNA:21   UACCUACAUCGACGACAUUUU   1   =***||||||||||||||||* targets:340   GCUUAUGUAGCUGCUGUAAAU   360 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii uncharacterized LOC105775329 (LOC105775329), transcript variant X5, mRNA	uncharacterized LOC105775329(LOC105775329)	coding protein	psRNATarget
XM_012597954.1	ncRNA:21   UACCUACAUCGACGACAUUUU   1   =***||||||||||||||||* targets:341   GCUUAUGUAGCUGCUGUAAAU   361 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii uncharacterized LOC105775329 (LOC105775329), transcript variant X3, mRNA	uncharacterized LOC105775329(LOC105775329)	coding protein	psRNATarget
XM_012597979.1	ncRNA:21   UACCUACAUCGACGACAUUUU   1   =***||||||||||||||||* targets:341   GCUUAUGUAGCUGCUGUAAAU   361 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii uncharacterized LOC105775329 (LOC105775329), transcript variant X4, mRNA	uncharacterized LOC105775329(LOC105775329)	coding protein	psRNATarget
XM_012597912.1	ncRNA:21   UACCUACAUCGACGACAUUUU   1   =***||||||||||||||||* targets:341   GCUUAUGUAGCUGCUGUAAAU   361 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii uncharacterized LOC105775329 (LOC105775329), transcript variant X2, mRNA	uncharacterized LOC105775329(LOC105775329)	coding protein	psRNATarget
XM_012597872.1	ncRNA:21   UACCUACAUCGACGACAUUUU   1   =***||||||||||||||||* targets:341   GCUUAUGUAGCUGCUGUAAAU   361 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii uncharacterized LOC105775329 (LOC105775329), transcript variant X1, mRNA	uncharacterized LOC105775329(LOC105775329)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).