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BaseInfo

ncRNA ID	gra-miR3476
Species	Gossypium raimondii
Class	miRNA
Genome position	chr3:44555138-44555263 [-]
Reference genome	Graimondii2_0
Source	miRBase
Length	21
Mature sequence(if miRNA)	86 - UCGGACUGGAUUUGUUGACAA - 106
Stem-loop(if miRNA)	-------    AUU   GU    UG A         -          ---   U        GAAGC    A        CAGU   CCG  GUCU  G UCGGACUGG AUUUGUUGAC   AAA GCAUUUUU     AGAU A        ||||   |||  ||||  | ||||||||| ||||||||||   ||| ||||||||     |||| C        GUCG   GGU  UAGA  C AGUUUGACC UAAACAACUG   UUU CGUAAAAA     UCUA A ACUUAGA    ---   --    GU G         A          ACC   U        -----    A
Stem-loop sequence	CAGUAUUCCGGUGUCUUGGAUCGGACUGGAUUUGUUGACAAAUGCAUUUUUGAAGCAGAUAACAAAUCUAAAAAUGCUUUUCCAGUCAACAAAUACCAGUUUGAGCUGAGAUUGGGCUGAGAUUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012616598.1	ncRNA:21   AACAGUUGUUUAGGUCAGGCU   1   **||||||||||||||||||= targets:507   CAGUCAACAAAUCCAGUCCGG   527 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii uncharacterized LOC105789272 (LOC105789272), mRNA	uncharacterized LOC105789272(LOC105789272)	coding protein	psRNATarget
XM_012616588.1	ncRNA:21   AACAGUUGUUUAGGUCAGGCU   1   **||||||||||||||||||= targets:259   CAGUCAACAAAUCCAGUCCGG   279 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii uncharacterized LOC105789267 (LOC105789267), transcript variant X4, mRNA	uncharacterized LOC105789267(LOC105789267)	coding protein	psRNATarget
XM_012616585.1	ncRNA:21   AACAGUUGUUUAGGUCAGGCU   1   **||||||||||||||||||= targets:444   CAGUCAACAAAUCCAGUCCGG   464 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii uncharacterized LOC105789267 (LOC105789267), transcript variant X1, mRNA	uncharacterized LOC105789267(LOC105789267)	coding protein	psRNATarget
XM_012616586.1	ncRNA:21   AACAGUUGUUUAGGUCAGGCU   1   **||||||||||||||||||= targets:569   CAGUCAACAAAUCCAGUCCGG   589 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii uncharacterized LOC105789267 (LOC105789267), transcript variant X2, mRNA	uncharacterized LOC105789267(LOC105789267)	coding protein	psRNATarget
XM_012616587.1	ncRNA:21   AACAGUUGUUUAGGUCAGGCU   1   **||||||||||||||||||= targets:579   CAGUCAACAAAUCCAGUCCGG   599 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii uncharacterized LOC105789267 (LOC105789267), transcript variant X3, mRNA	uncharacterized LOC105789267(LOC105789267)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).