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BaseInfo

ncRNA ID	gra-miR8697
Species	Gossypium raimondii
Class	miRNA
Genome position	chr3:39386073-39386426 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	24
Mature sequence(if miRNA)	11 - AGGGAAAUUGAUUCAAGUGAGCAU - 34
Stem-loop(if miRNA)	-      A                           --------                                           AUC         UCU         -A          UCAUAAAA     UAUCU         ---    A      CAUUU   GUUAUAAGUAUGUAUGAU  CAUUUU UGCAGGGAAAUUGAUUCAAGUGAGCAU        UGCUUUAAAAACAUUGUUUUACAUUUGUUUAGUAUAUAAAUUG   AUUUUUUUU   GGUUUAUUU  UCUUUCUUUC        CUUAA     AUGUAUGUA   UUUU UUGUAG     GGU                  G  |||||| |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||   |||||||||   |||||||||  ||||||||||        |||||     |||||||||   |||| ||||||     |||  GUAGAA ACGUCCCUUUGACUAAGUUCACUCGUA        ACGAAAUUUUUGUAACAAAAUGUAAACAAAUCAUAUAUUUAAC   UAAAAAAAA   CCAAAUAAA  AGAAAGAAAG        GAGUU     UACGUACGU   AAAA AGCGUC     CCG                  A U      A                           UAAACUAC                                           GAA         --C         AC          --UGCAAC     -----         CCC    A      ----A   UAACUAGUCGGAUCCGAG
Stem-loop sequence	CAUUUUAUGCAGGGAAAUUGAUUCAAGUGAGCAUUGCUUUAAAAACAUUGUUUUACAUUUGUUUAGUAUAUAAAUUGAUCAUUUUUUUUUCUGGUUUAUUUAUCUUUCUUUCUCAUAAAACUUAAUAUCUAUGUAUGUAUUUUAUUGUAGCAUUUGGUGUUAUAAGUAUGUAUGAUGAGAGCCUAGGCUGAUCAAUGCCACUGCGAAAAAACCCUGCAUGCAUUUGAGCAACGUGAAAGAAAGACAAAAUAAACCCAAAAAAAAUAAGCAAUUUAUAUACUAAACAAAUGUAAAACAAUGUUUUUAAAGCACAUCAAAUAUGCUCACUUGAAUCAGUUUCCCUGCAAAAGAUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012626016.1	ncRNA:24   UAC--GAGUGAACUUAGUUAAAGGGA   1   |||--|||*||||||||||||||*|| targets:69   AUGGUCUCCCUUGAAUCAAUUUCACU   94 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii protein FAM133-like (LOC105796348), transcript variant X3, mRNA	protein FAM133-like(LOC105796348)	coding protein	psRNATarget
XM_012626015.1	ncRNA:24   UAC--GAGUGAACUUAGUUAAAGGGA   1   |||--|||*||||||||||||||*|| targets:69   AUGGUCUCCCUUGAAUCAAUUUCACU   94 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii protein FAM133-like (LOC105796348), transcript variant X2, mRNA	protein FAM133-like(LOC105796348)	coding protein	psRNATarget
XM_012626014.1	ncRNA:24   UAC--GAGUGAACUUAGUUAAAGGGA   1   |||--|||*||||||||||||||*|| targets:69   AUGGUCUCCCUUGAAUCAAUUUCACU   94 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii protein FAM133-like (LOC105796348), transcript variant X1, mRNA	protein FAM133-like(LOC105796348)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).