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BaseInfo

ncRNA ID gra-miR172a
Species Gossypium raimondii
Class miRNA
Genome position chr3:38291923-38292084 [-]
Reference genome Graimondii2_0
Source miRBase
Length 21
Mature sequence(if miRNA) 132 - GCGGCAUUAUCAAGAUUCACA - 152
Stem-loop(if miRNA) -      A                     A  AACUUAGUAC    UUU A      AGCC      U       A    UA
 GUUUGC GAUGCGGCAUUAUCAAGAUUC CA          AGGG   C UUGGAG    AAAGGG GUGGUUU GUGG  C
 |||||| ||||||||||||||||||||| ||          ||||   | ||||||    |||||| ||||||| ||||  C
 CAAACG CUACGUCGUAGUAGUUCUAAG GU          UCCU   G AACUUC    UUUCCU CACUAAA CACC  C
A      A                     G  --AUAAACUU    UUU A      --AU      C       A    UC
Stem-loop sequence GUUUGCAGAUGCGGCAUUAUCAAGAUUCACAAACUUAGUACAGGGUUUCAUUGGAGAGCCAAAGGGUGUGGUUUAGUGGUACCCCUCCACAAAAUCACCUCCUUUUACUUCAAAGUUUUCCUUUCAAAUAUGGGAAUCUUGAUGAUGCUGCAUCAGCAAACA

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).