ncRNA ID | gra-miR172a |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr3:38291923-38292084 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 132 - GCGGCAUUAUCAAGAUUCACA - 152 |
Stem-loop(if miRNA) |
-      A                     A  AACUUAGUAC    UUU A      AGCC      U       A    UA  GUUUGC GAUGCGGCAUUAUCAAGAUUC CA          AGGG   C UUGGAG    AAAGGG GUGGUUU GUGG  C  |||||| ||||||||||||||||||||| ||          ||||   | ||||||    |||||| ||||||| ||||  C  CAAACG CUACGUCGUAGUAGUUCUAAG GU          UCCU   G AACUUC    UUUCCU CACUAAA CACC  C A      A                     G  --AUAAACUU    UUU A      --AU      C       A    UC |
Stem-loop sequence | GUUUGCAGAUGCGGCAUUAUCAAGAUUCACAAACUUAGUACAGGGUUUCAUUGGAGAGCCAAAGGGUGUGGUUUAGUGGUACCCCUCCACAAAAUCACCUCCUUUUACUUCAAAGUUUUCCUUUCAAAUAUGGGAAUCUUGAUGAUGCUGCAUCAGCAAACA |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |