ncRNA ID | gra-miR8674c |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr3:37019414-37019853 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 11 - AAGGGAUACAGGAUGAUGUGGCAU - 34 |
Stem-loop(if miRNA) |
UGAAACAAAGAC                                                                                        --------------UUA     - ACCCUAAACUAUGGAUCCUGAACCUUGAACCCUAAACCAUGGACCCUGGACCUAGGGACCCUGUACCUUGGACCCAAGGUUUAGGGUCGAGGUUGAGAUUAG             GCCACAUUAUCUUGUAUCCCUUACCAAUUAUUUAAUGCCAUUUCAACAUCUUUUUCUAUGUCAUUGACACAUCAUUUUGGUGAUUUUU                 ACCUG A                                                                                                      G             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||| |                                                                                                      G             CGGUGUAGUAGGACAUAGGGAAUGGUUAAUAAAUUACGGUAAAGUUGUAGAAAAAGGUACAGUAACUGUGUAGUAAAACCAUUAAAAA                 GAUCU G                                                                                                      U AUUAAUAAAUUA                                                                                        UUGAACUUUGUAGCUAG     G AACUUGAGAUCUGGAACUUGGGACCUGGGACUUAGAAUUUGGAAGCUGGAACCUGGGGUUUGGAACUUGGAACCUACGAUUUGGGAUUUGAAACCUAAAACU |
Stem-loop sequence | UGAAACAAAGACGCCACAUUAUCUUGUAUCCCUUACCAAUUAUUUAAUGCCAUUUCAACAUCUUUUUCUAUGUCAUUGACACAUCAUUUUGGUGAUUUUUUUAACCUGAACCCUAAACUAUGGAUCCUGAACCUUGAACCCUAAACCAUGGACCCUGGACCUAGGGACCCUGUACCUUGGACCCAAGGUUUAGGGUCGAGGUUGAGAUUAGGGUUCAAAAUCCAAAGUUUAGGGUUUAGCAUCCAAGGUUCAAGGUUUGGGGUCCAAGGUCGAAGGUUUAAGAUUCAGGGUCCAGGGUUCAAGGUCUAGAGUUCAAGGUCUAGGAUCGAUGUUUCAAGUUAAAAAUUACCAAAAUGAUGUGUCAAUGACAUGGAAAAAGAUGUUGAAAUGGCAUUAAAUAAUUGGUAAGGGAUACAGGAUGAUGUGGCAUUAAAUAAUUA |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |