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BaseInfo

ncRNA ID gra-miR8674c
Species Gossypium raimondii
Class miRNA
Genome position chr3:37019414-37019853 [-]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 11 - AAGGGAUACAGGAUGAUGUGGCAU - 34
Stem-loop(if miRNA) UGAAACAAAGAC                                                                                        --------------UUA     - ACCCUAAACUAUGGAUCCUGAACCUUGAACCCUAAACCAUGGACCCUGGACCUAGGGACCCUGUACCUUGGACCCAAGGUUUAGGGUCGAGGUUGAGAUUAG
            GCCACAUUAUCUUGUAUCCCUUACCAAUUAUUUAAUGCCAUUUCAACAUCUUUUUCUAUGUCAUUGACACAUCAUUUUGGUGAUUUUU                 ACCUG A                                                                                                      G
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||| |                                                                                                      G
            CGGUGUAGUAGGACAUAGGGAAUGGUUAAUAAAUUACGGUAAAGUUGUAGAAAAAGGUACAGUAACUGUGUAGUAAAACCAUUAAAAA                 GAUCU G                                                                                                      U
AUUAAUAAAUUA                                                                                        UUGAACUUUGUAGCUAG     G AACUUGAGAUCUGGAACUUGGGACCUGGGACUUAGAAUUUGGAAGCUGGAACCUGGGGUUUGGAACUUGGAACCUACGAUUUGGGAUUUGAAACCUAAAACU
Stem-loop sequence UGAAACAAAGACGCCACAUUAUCUUGUAUCCCUUACCAAUUAUUUAAUGCCAUUUCAACAUCUUUUUCUAUGUCAUUGACACAUCAUUUUGGUGAUUUUUUUAACCUGAACCCUAAACUAUGGAUCCUGAACCUUGAACCCUAAACCAUGGACCCUGGACCUAGGGACCCUGUACCUUGGACCCAAGGUUUAGGGUCGAGGUUGAGAUUAGGGUUCAAAAUCCAAAGUUUAGGGUUUAGCAUCCAAGGUUCAAGGUUUGGGGUCCAAGGUCGAAGGUUUAAGAUUCAGGGUCCAGGGUUCAAGGUCUAGAGUUCAAGGUCUAGGAUCGAUGUUUCAAGUUAAAAAUUACCAAAAUGAUGUGUCAAUGACAUGGAAAAAGAUGUUGAAAUGGCAUUAAAUAAUUGGUAAGGGAUACAGGAUGAUGUGGCAUUAAAUAAUUA

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).