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BaseInfo

ncRNA ID	gra-miR8647
Species	Gossypium raimondii
Class	miRNA
Genome position	chr3:18899142-18899342 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	21
Mature sequence(if miRNA)	171 - ACCGAUUUGCUCUUUGAUCUA - 191
Stem-loop(if miRNA)	AUGAGC             A         A  -C       C      UUA   A  C UAUUU        CUGAUCC    AUGUAAGCAUAAGGUACACG       AUGUUAGAUCAAA AGUAAAUUG UC  UUUUGUU AAAAUU   UCA UU C     GUUAAAAA       AUGC                    U       ||||||||||||| ||||||||| ||  ||||||| ||||||   ||| || |     ||||||||       ||||                    G       UGUAAUCUAGUUU UCGUUUAGC AG  AAGAUAA UUUUAA   AGU AA G     CAAUUUUU       CCAU                    G AAUAUA             C         C  UA       U      UUA   A  A --UGC        -----AC    ACCAACUGUAUUAUUAGUUC
Stem-loop sequence	AUGAGCAUGUUAGAUCAAAAAGUAAAUUGAUCCUUUUGUUCAAAAUUUUAUCAAUUCCUAUUUGUUAAAAACUGAUCCAUGCAUGUAAGCAUAAGGUACACGUGGCUUGAUUAUUAUGUCAACCAUACCCAUUUUUAACCGUGAAAAUGAAUUAAUUUUUAAUAGAAAUGACCGAUUUGCUCUUUGAUCUAAUGUAUAUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012622589.1	ncRNA:21   AUCUAGUUUCUCGUUUAGCCA   1   ||||||||||||||||*|||| targets:1068   UAGAUCAAAGAGCAAACCGGU   1088 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii transcription repressor MYB6 (LOC105793743), mRNA	transcription repressor MYB6(LOC105793743)	coding protein	psRNATarget
XM_012628326.1	ncRNA:21   AUCUAGUUUCUCGUUUAGCCA   1   |||||=|||||||||||=||| targets:1882   UAGAUUAAAGAGCAAAUUGGU   1902 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii pentatricopeptide repeat-containing protein At1g33350 (LOC105798303), mRNA	pentatricopeptide repeat-containing protein At1g33350(LOC105798303)	coding protein	psRNATarget
XM_012633992.1	ncRNA:21   AUCUAGUUUCUCGUUUAGCCA   1   |||*|||||||||||||=||| targets:1170   UAGUUCAAAGAGCAAAUUGGU   1190 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X3, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012633993.1	ncRNA:21   AUCUAGUUUCUCGUUUAGCCA   1   |||*|||||||||||||=||| targets:1222   UAGUUCAAAGAGCAAAUUGGU   1242 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X4, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012633989.1	ncRNA:21   AUCUAGUUUCUCGUUUAGCCA   1   |||*|||||||||||||=||| targets:1226   UAGUUCAAAGAGCAAAUUGGU   1246 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X1, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012633990.1	ncRNA:21   AUCUAGUUUCUCGUUUAGCCA   1   |||*|||||||||||||=||| targets:1290   UAGUUCAAAGAGCAAAUUGGU   1310 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X2, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012602652.1	ncRNA:21   AUCUAGUUUCUCGUUUAGCCA   1   |||||||||||||||||*||* targets:2133   UAGAUCAAAGAGCAAAUAGGA   2153 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii protein NRT1/ PTR FAMILY 8.3-like (LOC105778904), transcript variant X1, mRNA	protein NRT1/ PTR FAMILY 8.3-like(LOC105778904)	coding protein	psRNATarget
XM_012602655.1	ncRNA:21   AUCUAGUUUCUCGUUUAGCCA   1   |||||||||||||||||*||* targets:2192   UAGAUCAAAGAGCAAAUAGGA   2212 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii protein NRT1/ PTR FAMILY 8.3-like (LOC105778904), transcript variant X3, mRNA	protein NRT1/ PTR FAMILY 8.3-like(LOC105778904)	coding protein	psRNATarget
XM_012602653.1	ncRNA:21   AUCUAGUUUCUCGUUUAGCCA   1   |||||||||||||||||*||* targets:2194   UAGAUCAAAGAGCAAAUAGGA   2214 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii protein NRT1/ PTR FAMILY 8.3-like (LOC105778904), transcript variant X2, mRNA	protein NRT1/ PTR FAMILY 8.3-like(LOC105778904)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).