| ncRNA ID | gra-miR8640 |
| Species | Gossypium raimondii |
| Class | miRNA |
| Genome position | chr3:9831780-9831932 [+] |
| Reference genome | Graimondii2_0 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 123 - UCUGACAGUGCACUGAAAACG - 143 |
| Stem-loop(if miRNA) |
C A ACC ACA -AA A ACGUAGGACGUGUUUUCAGUGCAUU UCAGAAAAAAGCACUGAAAGU UCUAGUUGGAC UUUUC CU A ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||| || C UGCAUCCUGCGCAAAAGUCACGUGA AGUCUUUUUUCGUGACUUUCG AGGUCAACUUG AAAAG GG A - C CUU CAC CAC U |
| Stem-loop sequence | CACGUAGGACGUGUUUUCAGUGCAUUAUCAGAAAAAAGCACUGAAAGUACCUCUAGUUGGACACAUUUUCAACUAACAUGGCACGAAAACACGUUCAACUGGAUUCGCUUUCAGUGCUUUUUUCUGACAGUGCACUGAAAACGCGUCCUACGU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_012587723.1 |
|
3.0 | PREDICTED: Gossypium raimondii uncharacterized LOC105768030 (LOC105768030), transcript variant X3, mRNA | uncharacterized LOC105768030(LOC105768030) | coding protein | psRNATarget | |||||||||
| XM_012587724.1 |
|
3.0 | PREDICTED: Gossypium raimondii uncharacterized LOC105768030 (LOC105768030), transcript variant X4, mRNA | uncharacterized LOC105768030(LOC105768030) | coding protein | psRNATarget | |||||||||
| XM_012587722.1 |
|
3.0 | PREDICTED: Gossypium raimondii uncharacterized LOC105768030 (LOC105768030), transcript variant X2, mRNA | uncharacterized LOC105768030(LOC105768030) | coding protein | psRNATarget | |||||||||
| XM_012587721.1 |
|
3.0 | PREDICTED: Gossypium raimondii uncharacterized LOC105768030 (LOC105768030), transcript variant X1, mRNA | uncharacterized LOC105768030(LOC105768030) | coding protein | psRNATarget |
| 1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |