Search result

BaseInfo

ncRNA ID gra-miR8657b
Species Gossypium raimondii
Class miRNA
Genome position chr3:5461726-5461934 [-]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 176 - UGUAGUAAUUGUAGAAGUUCAGGG - 199
Stem-loop(if miRNA) U   C          U             CA   ---------------------------ACUAUUCUGCUAUUUUUCCUUUUCCA    U   UACAAGAUCUUGAUAUAAAAUA
 GGA UAAAUUGUAG AAUUGUAGAAGUU  GGG                                                     CGAG AUC                      U
 ||| |||||||||| |||||||||||||  |||                                                     |||| |||                      G
 CCU AUUUAACGUU UUAACAUUUUCAA  CCC                                                     UACU UUA                      A
C   A          U             AC   AUUAAUACAUUUAAAUUUUUUACUUUCCCAUAAUUAACAUUUUACCUAACCUU    -   UAUACGAUUAUUUACUCGUUAA
Stem-loop sequence UGGACUAAAUUGUAGUAAUUGUAGAAGUUCAGGGACUAUUCUGCUAUUUUUCCUUUUCCACGAGUAUCUACAAGAUCUUGAUAUAAAAUAUGAAAUUGCUCAUUUAUUAGCAUAUAUUUCAUUUCCAAUCCAUUUUACAAUUAAUACCCUUUCAUUUUUUAAAUUUACAUAAUUACCCCAAACUUUUACAAUUUUUGCAAUUUAAUCCC

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).