ncRNA ID | gra-miR8725 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr3:1634804-1635105 [+] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 269 - CCUGACUAGAGACAAUACCAACCU - 292 |
Stem-loop(if miRNA) |
A          A         A  C        A     AUCUC  UG U GCCUAAGGCGAUAAGUUUGCAGAAUAAGGGCACCUCAUCGAGAUUGGACCAUACAUGUUGCACCUACCAUAGUAAAGUUUGAACCUUGUCAAAAUGUCUAU  AUCUUUAAUA GUUGGUAUU UC UUGGUUAG GUUUU     UC  A U                                                                                                     A  |||||||||| ||||||||| || |||||||| |||||     ||  | |                                                                                                     U  UAGGAGUUAU CAACCAUAA AG GAUCAGUC CAAAA     AG  G G                                                                                                     U C          C         C  A        -     -GCAA  -- - UUGAAAUUCCUCUCAGGUUUAUGGAUUCCGCUACCCAAGUAUCUCGUUCUCGUGGAACAGUUAUAGCCUGGUACACACCGUGUGUUAGUGGAUAGUUUCCU |
Stem-loop sequence | AAUCUUUAAUAAGUUGGUAUUAUCCUUGGUUAGAGUUUUAUCUCUCUGAUUGCCUAAGGCGAUAAGUUUGCAGAAUAAGGGCACCUCAUCGAGAUUGGACCAUACAUGUUGCACCUACCAUAGUAAAGUUUGAACCUUGUCAAAAUGUCUAUAUUUCCUUUGAUAGGUGAUUGUGUGCCACACAUGGUCCGAUAUUGACAAGGUGCUCUUGCUCUAUGAACCCAUCGCCUUAGGUAUUUGGACUCUCCUUAAAGUUGGGAAACGAAAACCUGACUAGAGACAAUACCAACCUAUUGAGGAUC |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |