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BaseInfo

ncRNA ID gra-miR8725
Species Gossypium raimondii
Class miRNA
Genome position chr3:1634804-1635105 [+]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 269 - CCUGACUAGAGACAAUACCAACCU - 292
Stem-loop(if miRNA) A          A         A  C        A     AUCUC  UG U GCCUAAGGCGAUAAGUUUGCAGAAUAAGGGCACCUCAUCGAGAUUGGACCAUACAUGUUGCACCUACCAUAGUAAAGUUUGAACCUUGUCAAAAUGUCUAU
 AUCUUUAAUA GUUGGUAUU UC UUGGUUAG GUUUU     UC  A U                                                                                                     A
 |||||||||| ||||||||| || |||||||| |||||     ||  | |                                                                                                     U
 UAGGAGUUAU CAACCAUAA AG GAUCAGUC CAAAA     AG  G G                                                                                                     U
C          C         C  A        -     -GCAA  -- - UUGAAAUUCCUCUCAGGUUUAUGGAUUCCGCUACCCAAGUAUCUCGUUCUCGUGGAACAGUUAUAGCCUGGUACACACCGUGUGUUAGUGGAUAGUUUCCU
Stem-loop sequence AAUCUUUAAUAAGUUGGUAUUAUCCUUGGUUAGAGUUUUAUCUCUCUGAUUGCCUAAGGCGAUAAGUUUGCAGAAUAAGGGCACCUCAUCGAGAUUGGACCAUACAUGUUGCACCUACCAUAGUAAAGUUUGAACCUUGUCAAAAUGUCUAUAUUUCCUUUGAUAGGUGAUUGUGUGCCACACAUGGUCCGAUAUUGACAAGGUGCUCUUGCUCUAUGAACCCAUCGCCUUAGGUAUUUGGACUCUCCUUAAAGUUGGGAAACGAAAACCUGACUAGAGACAAUACCAACCUAUUGAGGAUC

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).