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BaseInfo

ncRNA ID	gra-miR5207
Species	Gossypium raimondii
Class	miRNA
Genome position	chr2:55348108-55348285 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	24
Mature sequence(if miRNA)	11 - CUUAAGGUGGGUUUGGAUGGGCGA - 34
Stem-loop(if miRNA)	GAAUAGAAAC    A                    ---------    -----U  GGUGCGGUGCGUUUAGUUUACUUUUUGUCUCACGCUACA           CUUA GGUGGGUUUGGAUGGGCGAU         UGGG      GC                                       G           |||| ||||||||||||||||||||         ||||      ||           GAAU CCACUCGAACCUACCCGCUA         ACCC      CA                                       U AUUGAAGACU    C                    UGCAAAUGA    CAAUCA  UUUUUGUCGCCACCGCCACUCUAAUCUAUGACAUCGCUA
Stem-loop sequence	GAAUAGAAACCUUAAGGUGGGUUUGGAUGGGCGAUUGGGUGCGGUGCGGUGCGUUUAGUUUACUUUUUGUCUCACGCUACAGUAUCGCUACAGUAUCUAAUCUCACCGCCACCGCUGUUUUUACACUAACCCCAAGUAAACGUAUCGCCCAUCCAAGCUCACCCUAAGUCAGAAGUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012623209.1	ncRNA:24   AGCGGGUAGGUUUGGGUGGAAUUC   1   |||||||||||||||||||||||* targets:110   UCGCCCAUCCAAACCCACCUUAAA   133 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii probable LRR receptor-like serine/threonine-protein kinase At1g14390 (LOC105794173), mRNA	probable LRR receptor-like serine/threonine-protein kinase At1g14390(LOC105794173)	coding protein	psRNATarget
XM_012612646.1	ncRNA:24   AGCGGGUAGGUUUGGGUGGAAUUC   1   *||||=||||||||=||||||||| targets:101   CCGCCUAUCCAAACUCACCUUAAG   124 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105786274 (LOC105786274), mRNA	uncharacterized LOC105786274(LOC105786274)	coding protein	psRNATarget
XM_012628311.1	ncRNA:24   AGCGGGUAGGUUUGGGUGGAAUUC   1   *||=||||||||||=||||||||* targets:1304   CCGUCCAUCCAAACUCACCUUAAU   1327 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105798293 (LOC105798293), transcript variant X2, mRNA	uncharacterized LOC105798293(LOC105798293)	coding protein	psRNATarget
XM_012615039.1	ncRNA:24   AGCGGGUAGGUUUGGGUGGAAUUC   1   *|*==||||||||||=|||||||* targets:2233   CCCUUCAUCCAAACCUACCUUAAA   2256 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii ABC transporter C family member 10-like (LOC105788244), transcript variant X3, mRNA	ABC transporter C family member 10-like(LOC105788244)	coding protein	psRNATarget
XM_012615038.1	ncRNA:24   AGCGGGUAGGUUUGGGUGGAAUUC   1   *|*==||||||||||=|||||||* targets:2196   CCCUUCAUCCAAACCUACCUUAAA   2219 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii ABC transporter C family member 10-like (LOC105788244), transcript variant X2, mRNA	ABC transporter C family member 10-like(LOC105788244)	coding protein	psRNATarget
XM_012615037.1	ncRNA:24   AGCGGGUAGGUUUGGGUGGAAUUC   1   *|*==||||||||||=|||||||* targets:1989   CCCUUCAUCCAAACCUACCUUAAA   2012 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii ABC transporter C family member 10-like (LOC105788244), transcript variant X1, mRNA	ABC transporter C family member 10-like(LOC105788244)	coding protein	psRNATarget
XM_012615040.1	ncRNA:24   AGCGGGUAGGUUUGGGUGGAAUUC   1   *|*==||||||||||=|||||||* targets:1989   CCCUUCAUCCAAACCUACCUUAAA   2012 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii ABC transporter C family member 10-like (LOC105788244), transcript variant X4, mRNA	ABC transporter C family member 10-like(LOC105788244)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).