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BaseInfo

ncRNA ID gra-miR8654c
Species Gossypium raimondii
Class miRNA
Genome position chr2:53874733-53874984 [-]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 11 - AAGGAUACUACUUUGAUGGAGAAA - 34
Stem-loop(if miRNA) A                                             C      U         GA                  ---CACAACAAC   UUCUUUAAUCACAACAACCUCUGCCGCCC
 ACUUAUUCUUUUUCUUCAUCAAAGUAGUAUUCUUAACCUCAUUAU CAAAAU UGUGUCAGA  UGGGGGCAAGAAGACUUU            GAG                             C
 ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||  ||||||||||||||||||            |||
 UGAAUAAGAAAAAGAGGUAGUUUCAUCAUAGGAAUUGGAGUAAUA GUUUUA ACACAGUUU  ACCCCCGUUCUUUUGAAA            GUU                             G
-                                             A      U         AC                  AUCUCCAUCACU   UAUGCUAUCUCCUUUCGAUUUUUAGCUGA
Stem-loop sequence AACUUAUUCUUUUUCUUCAUCAAAGUAGUAUUCUUAACCUCAUUAUCCAAAAUUUGUGUCAGAGAUGGGGGCAAGAAGACUUUCACAACAACGAGUUCUUUAAUCACAACAACCUCUGCCGCCCCGAGUCGAUUUUUAGCUUUCCUCUAUCGUAUUUGUCACUACCUCUAAAAGUUUUCUUGCCCCCACAUUUGACACAUAUUUUGAAUAAUGAGGUUAAGGAUACUACUUUGAUGGAGAAAAAGAAUAAGU

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).