ncRNA ID | gra-miR8654c |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr2:53874733-53874984 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 11 - AAGGAUACUACUUUGAUGGAGAAA - 34 |
Stem-loop(if miRNA) |
A                                             C      U         GA                  ---CACAACAAC   UUCUUUAAUCACAACAACCUCUGCCGCCC  ACUUAUUCUUUUUCUUCAUCAAAGUAGUAUUCUUAACCUCAUUAU CAAAAU UGUGUCAGA  UGGGGGCAAGAAGACUUU            GAG                             C  ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||  ||||||||||||||||||            |||  UGAAUAAGAAAAAGAGGUAGUUUCAUCAUAGGAAUUGGAGUAAUA GUUUUA ACACAGUUU  ACCCCCGUUCUUUUGAAA            GUU                             G -                                             A      U         AC                  AUCUCCAUCACU   UAUGCUAUCUCCUUUCGAUUUUUAGCUGA |
Stem-loop sequence | AACUUAUUCUUUUUCUUCAUCAAAGUAGUAUUCUUAACCUCAUUAUCCAAAAUUUGUGUCAGAGAUGGGGGCAAGAAGACUUUCACAACAACGAGUUCUUUAAUCACAACAACCUCUGCCGCCCCGAGUCGAUUUUUAGCUUUCCUCUAUCGUAUUUGUCACUACCUCUAAAAGUUUUCUUGCCCCCACAUUUGACACAUAUUUUGAAUAAUGAGGUUAAGGAUACUACUUUGAUGGAGAAAAAGAAUAAGU |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |