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BaseInfo

ncRNA ID gra-miR8675b
Species Gossypium raimondii
Class miRNA
Genome position chr2:51421256-51421351 [+]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 63 - AGGUGAUGAUGUGGUACAAUCUCA - 86
Stem-loop(if miRNA) UU  GU   A   U                    A        AAAU
  UG  AUU UGA AUUGUGCCACAUCAUCACUU AAAGUUUA    U
  ||  ||| ||| |||||||||||||||||||| ||||||||
  AC  UGA ACU UAACAUGGUGUAGUAGUGGA UUUUAAAU    U
AC  UG   A   C                    C        AUAU
Stem-loop sequence UUUGGUAUUAUGAUAUUGUGCCACAUCAUCACUUAAAAGUUUAAAAUUUUAUAUAAAUUUUCAGGUGAUGAUGUGGUACAAUCUCAAAGUGUCACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012584903.1
ncRNA:24   ACUCUAACAUGGUGUAGUAGUGGA   1
  |||||||||*|*||||||||||||
targets:1546   UGAGAUUGUUCGACAUCAUCACCU   1569

2.5 PREDICTED: Gossypium raimondii protein SHOOT GRAVITROPISM 5-like (LOC105765699), mRNA protein SHOOT GRAVITROPISM 5-like(LOC105765699) coding protein psRNATarget

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).