ncRNA ID | gra-miR8675b |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr2:51421256-51421351 [+] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 63 - AGGUGAUGAUGUGGUACAAUCUCA - 86 |
Stem-loop(if miRNA) |
UU  GU   A   U                    A        AAAU   UG  AUU UGA AUUGUGCCACAUCAUCACUU AAAGUUUA    U   ||  ||| ||| |||||||||||||||||||| ||||||||   AC  UGA ACU UAACAUGGUGUAGUAGUGGA UUUUAAAU    U AC  UG   A   C                    C        AUAU |
Stem-loop sequence | UUUGGUAUUAUGAUAUUGUGCCACAUCAUCACUUAAAAGUUUAAAAUUUUAUAUAAAUUUUCAGGUGAUGAUGUGGUACAAUCUCAAAGUGUCACA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_012584903.1 |
|
2.5 | PREDICTED: Gossypium raimondii protein SHOOT GRAVITROPISM 5-like (LOC105765699), mRNA | protein SHOOT GRAVITROPISM 5-like(LOC105765699) | coding protein | psRNATarget |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |