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BaseInfo

ncRNA ID	gra-miR8651
Species	Gossypium raimondii
Class	miRNA
Genome position	chr2:36389047-36389273 [-]
Reference genome	Graimondii2_0
Source	miRBase
Length	24
Mature sequence(if miRNA)	11 - UUAAUGGAUCAUAACAGCAGGUAU - 34
Stem-loop(if miRNA)	U       U           A                                                            -A   GU  AAAAA      C   --       U  UUGGCAU GCAUACCUGCU UUAUGAUCCAUUAAUUCUGGAUAUCCCGUCUUCAAGCUCCCCUGCAUAUUUGGUAUCAGA  CAU  GC     AGAUUU CUU  UAAAUCU A  ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  ||     |||||| |||  |||||||  AACCGUA UGUAUGGACGA AAUACUAGGUAAUUAAGACCUAUAGGGCAGAAGUUCGAGGGGACGUAUAAACCAUAGUCU  GUA  UG     UCUAAA GAA  AUUUAGA A -       U           C                                                            CG   GU  -AGGA      A   AA       C
Stem-loop sequence	UUUGGCAUUGCAUACCUGCUAUUAUGAUCCAUUAAUUCUGGAUAUCCCGUCUUCAAGCUCCCCUGCAUAUUUGGUAUCAGAACAUGUGCAAAAAAGAUUUCCUUUAAAUCUUAACAGAUUUAAAAAGAAAAUCUAGGAGUUGAUGGCUCUGAUACCAAAUAUGCAGGGGAGCUUGAAGACGGGAUAUCCAGAAUUAAUGGAUCAUAACAGCAGGUAUGUUAUGCCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012612526.1	ncRNA:24   UAUGGACGACAAUACUAGGUAAUU   1   ||||=|||||||||||||=||||| targets:379   AUACUUGCUGUUAUGAUCUAUUAA   402 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii uncharacterized LOC105786190 (LOC105786190), mRNA	uncharacterized LOC105786190(LOC105786190)	coding protein	psRNATarget
XM_012612526.1	ncRNA:24   UAUGGACGACAAUACUAGGUAAUU   1   ||=|||*|||||||||||=||||| targets:258   AUGCCUACUGUUAUGAUCUAUUAA   281 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105786190 (LOC105786190), mRNA	uncharacterized LOC105786190(LOC105786190)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).