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BaseInfo

ncRNA ID gra-miR8643a
Species Gossypium raimondii
Class miRNA
Genome position chr2:23366322-23366471 [-]
Reference genome Graimondii2_0
Source miRBase
Length 21
Mature sequence(if miRNA) 120 - ACAUAUUAAGAAGUCGAAUUG - 140
Stem-loop(if miRNA) AUG               A            A  A          -A   GGAAGCCGAAAAGCCAUCAUUGCC
   UCUUUUAACAUAUUA GAAGUCGAAUUG CA UGAAGAAAGA  GUA                        U
   ||||||||||||||| |||||||||||| || ||||||||||  |||                        A
   AGAAAAUUGUAUAGU CUUCAGCUUAAC GU ACUUCUUUCU  GUA                        U
UAA               C            C  C          UA   CCAUGCCCAAAUACCCAAAACUAA
Stem-loop sequence AUGUCUUUUAACAUAUUAAGAAGUCGAAUUGACAAUGAAGAAAGAAGUAGGAAGCCGAAAAGCCAUCAUUGCCUAUAAUCAAAACCCAUAAACCCGUACCAUGAUUCUUUCUUCACUGCCAAUUCGACUUCCUGAUAUGUUAAAAGAAAU

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).