ncRNA ID | gra-miR8643a |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr2:23366322-23366471 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 120 - ACAUAUUAAGAAGUCGAAUUG - 140 |
Stem-loop(if miRNA) |
AUG               A            A  A          -A   GGAAGCCGAAAAGCCAUCAUUGCC    UCUUUUAACAUAUUA GAAGUCGAAUUG CA UGAAGAAAGA  GUA                        U    ||||||||||||||| |||||||||||| || ||||||||||  |||                        A    AGAAAAUUGUAUAGU CUUCAGCUUAAC GU ACUUCUUUCU  GUA                        U UAA               C            C  C          UA   CCAUGCCCAAAUACCCAAAACUAA |
Stem-loop sequence | AUGUCUUUUAACAUAUUAAGAAGUCGAAUUGACAAUGAAGAAAGAAGUAGGAAGCCGAAAAGCCAUCAUUGCCUAUAAUCAAAACCCAUAAACCCGUACCAUGAUUCUUUCUUCACUGCCAAUUCGACUUCCUGAUAUGUUAAAAGAAAU |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |