Search result

BaseInfo

ncRNA ID gra-miR8746
Species Gossypium raimondii
Class miRNA
Genome position chr2:11723652-11723756 [+]
Reference genome Graimondii2_0
Source miRBase
Length 21
Mature sequence(if miRNA) 75 - UCCAUAUUUCACUAUCUCUUA - 95
Stem-loop(if miRNA) UGUCUUUCU             C                -  A       AU
         AUAAGAGAUAGUG AAUAUGGAGGCUUGAG CA AGUGAAA  G
         ||||||||||||| |||||||||||||||| || |||||||
         UAUUCUCUAUCAC UUAUACCUCUGAACUU GU UCAUUUU  A
AGUAUUCCC             U                U  A       AU
Stem-loop sequence UGUCUUUCUAUAAGAGAUAGUGCAAUAUGGAGGCUUGAGCAAAGUGAAAAUGAUAUUUUACUAUGUUUCAAGUCUCCAUAUUUCACUAUCUCUUAUCCCUUAUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012605858.1
ncRNA:21   AUUCUCUAUCACUUUAUACCU   1
  |||||||*|||||||||||||
targets:1201   UAAGAGAGAGUGAAAUAUGGA   1221

1.0 PREDICTED: Gossypium raimondii putative disease resistance protein RGA3 (LOC105781325), transcript variant X1, mRNA putative disease resistance protein RGA3(LOC105781325) coding protein psRNATarget
XM_012605859.1
ncRNA:21   AUUCUCUAUCACUUUAUACCU   1
  |||||||*|||||||||||||
targets:1201   UAAGAGAGAGUGAAAUAUGGA   1221

1.0 PREDICTED: Gossypium raimondii putative disease resistance protein RGA3 (LOC105781325), transcript variant X2, mRNA putative disease resistance protein RGA3(LOC105781325) coding protein psRNATarget
XM_012606800.1
ncRNA:21   AUUCUCUAUCACUUUAUACCU   1
  |||||||*|||||||||||||
targets:923   UAAGAGACAGUGAAAUAUGGA   943

1.0 PREDICTED: Gossypium raimondii putative disease resistance protein RGA3 (LOC105782219), transcript variant X3, mRNA putative disease resistance protein RGA3(LOC105782219) coding protein psRNATarget
XM_012606799.1
ncRNA:21   AUUCUCUAUCACUUUAUACCU   1
  |||||||*|||||||||||||
targets:923   UAAGAGACAGUGAAAUAUGGA   943

1.0 PREDICTED: Gossypium raimondii putative disease resistance protein RGA3 (LOC105782219), transcript variant X2, mRNA putative disease resistance protein RGA3(LOC105782219) coding protein psRNATarget
XM_012606797.1
ncRNA:21   AUUCUCUAUCACUUUAUACCU   1
  |||||||*|||||||||||||
targets:923   UAAGAGACAGUGAAAUAUGGA   943

1.0 PREDICTED: Gossypium raimondii putative disease resistance protein RGA3 (LOC105782219), transcript variant X1, mRNA putative disease resistance protein RGA3(LOC105782219) coding protein psRNATarget
XM_012605854.1
ncRNA:21   AUUCUCUAUCACUUUAUACCU   1
  |||||||*|||||||||||||
targets:1368   UAAGAGAGAGUGAAAUAUGGA   1388

1.0 PREDICTED: Gossypium raimondii putative disease resistance protein RGA4 (LOC105781320), mRNA putative disease resistance protein RGA4(LOC105781320) coding protein psRNATarget
XM_012616221.1
ncRNA:21   AUUCUCUAUCACUUUAUACCU   1
  |||||||||||||=|||||||
targets:1284   UAAGAGAUAGUGAGAUAUGGA   1304

1.5 PREDICTED: Gossypium raimondii putative disease resistance protein RGA1 (LOC105789024), mRNA putative disease resistance protein RGA1(LOC105789024) coding protein psRNATarget
XM_012616426.1
ncRNA:21   AUUCUCUAUCACUUUAUACCU   1
  |=||||||||||||*||||||
targets:1175   UGAGAGAUAGUGAACUAUGGA   1195

1.5 PREDICTED: Gossypium raimondii putative disease resistance protein RGA1 (LOC105789164), transcript variant X2, mRNA putative disease resistance protein RGA1(LOC105789164) coding protein psRNATarget
XM_012616425.1
ncRNA:21   AUUCUCUAUCACUUUAUACCU   1
  |=||||||||||||*||||||
targets:1391   UGAGAGAUAGUGAACUAUGGA   1411

1.5 PREDICTED: Gossypium raimondii putative disease resistance protein RGA1 (LOC105789164), transcript variant X1, mRNA putative disease resistance protein RGA1(LOC105789164) coding protein psRNATarget
XM_012605856.1
ncRNA:21   AUUCUCUAUCACUUUAUACCU   1
  |||||||*|*|||||||||||
targets:1324   UAAGAGAGAAUGAAAUAUGGA   1344

2.5 PREDICTED: Gossypium raimondii putative disease resistance protein RGA4 (LOC105781323), transcript variant X2, mRNA putative disease resistance protein RGA4(LOC105781323) coding protein psRNATarget
XM_012630300.1
ncRNA:21   AUUCUCUAUCACUUUAUACCU   1
  **|||||||||||*||||||*
targets:88   GUAGAGAUAGUGACAUAUGGU   108

2.5 PREDICTED: Gossypium raimondii uncharacterized LOC105799630 (LOC105799630), transcript variant X4, mRNA uncharacterized LOC105799630(LOC105799630) coding protein psRNATarget
XM_012630297.1
ncRNA:21   AUUCUCUAUCACUUUAUACCU   1
  **|||||||||||*||||||*
targets:196   GUAGAGAUAGUGACAUAUGGU   216

2.5 PREDICTED: Gossypium raimondii uncharacterized LOC105799630 (LOC105799630), transcript variant X1, mRNA uncharacterized LOC105799630(LOC105799630) coding protein psRNATarget
XM_012630299.1
ncRNA:21   AUUCUCUAUCACUUUAUACCU   1
  **|||||||||||*||||||*
targets:333   GUAGAGAUAGUGACAUAUGGU   353

2.5 PREDICTED: Gossypium raimondii uncharacterized LOC105799630 (LOC105799630), transcript variant X3, mRNA uncharacterized LOC105799630(LOC105799630) coding protein psRNATarget
XM_012630298.1
ncRNA:21   AUUCUCUAUCACUUUAUACCU   1
  **|||||||||||*||||||*
targets:332   GUAGAGAUAGUGACAUAUGGU   352

2.5 PREDICTED: Gossypium raimondii uncharacterized LOC105799630 (LOC105799630), transcript variant X2, mRNA uncharacterized LOC105799630(LOC105799630) coding protein psRNATarget

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).
© 2017 OPP-ncRBASE. All rights reserved.