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BaseInfo

ncRNA ID	gra-miR8719
Species	Gossypium raimondii
Class	miRNA
Genome position	chr2:4465269-4465355 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	24
Mature sequence(if miRNA)	11 - CAAAUUGGAUAACUGGACAGGUAA - 34
Stem-loop(if miRNA)	-     A                             CUGCC      UUAGC GAUGCAAAUUGGAUAACUGGACAGGUAAU     GUAGA  ||||| |||||||||||||||||||||||||||||     ||||A  GGUCG CUACGUUUAACCUAUUGACCUGUCCAUUA     UAUCA A     G                             -----
Stem-loop sequence	UUAGCAGAUGCAAAUUGGAUAACUGGACAGGUAAUCUGCCGUAGAAACUAUAUUACCUGUCCAGUUAUCCAAUUUGCAUCGGCUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012613173.1	ncRNA:24   AAUGGACAGGUCAAUAGGUUAAAC   1   |||||||||||||||||||||||| targets:390   UUACCUGUCCAGUUAUCCAAUUUG   413 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii putative receptor-like protein kinase At3g47110 (LOC105786670), mRNA	putative receptor-like protein kinase At3g47110(LOC105786670)	coding protein	psRNATarget
XM_012599931.1	ncRNA:24   AAUGGACAGGUCAAUAGGUUAAAC   1   |||||||||||||||||||||||| targets:367   UUACCUGUCCAGUUAUCCAAUUUG   390 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii LRR receptor-like serine/threonine-protein kinase EFR (LOC105776945), mRNA	LRR receptor-like serine/threonine-protein kinase EFR(LOC105776945)	coding protein	psRNATarget
XM_012600172.1	ncRNA:24   AAUGGACAGGUCAAUAGGUUAAAC   1   |||||||||||||||||||||||| targets:421   UUACCUGUCCAGUUAUCCAAUUUG   444 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii putative receptor-like protein kinase At3g47110 (LOC105777105), mRNA	putative receptor-like protein kinase At3g47110(LOC105777105)	coding protein	psRNATarget
XM_012600181.1	ncRNA:24   AAUGGACAGGUCAAUAGGUUAAAC   1   |||||||*|||||||||||||||| targets:271   UUACCUGCCCAGUUAUCCAAUUUG   294 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii probable LRR receptor-like serine/threonine-protein kinase At3g47570 (LOC105777114), transcript variant X1, mRNA	probable LRR receptor-like serine/threonine-protein kinase At3g47570(LOC105777114)	coding protein	psRNATarget
XM_012608219.1	ncRNA:24   AAUGGACAGGUCAAUAGGUUAAAC   1   **||=|||||||||||*||||||* targets:3095   CAACUUGUCCAGUUAUACAAUUUA   3118 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105783041 (LOC105783041), transcript variant X6, mRNA	hypothetical protein(LOC105783041)	coding protein	psRNATarget
XM_012608217.1	ncRNA:24   AAUGGACAGGUCAAUAGGUUAAAC   1   **||=|||||||||||*||||||* targets:3541   CAACUUGUCCAGUUAUACAAUUUA   3564 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105783041 (LOC105783041), transcript variant X4, mRNA	hypothetical protein(LOC105783041)	coding protein	psRNATarget
XM_012608214.1	ncRNA:24   AAUGGACAGGUCAAUAGGUUAAAC   1   **||=|||||||||||*||||||* targets:3541   CAACUUGUCCAGUUAUACAAUUUA   3564 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105783041 (LOC105783041), transcript variant X1, mRNA	hypothetical protein(LOC105783041)	coding protein	psRNATarget
XM_012608215.1	ncRNA:24   AAUGGACAGGUCAAUAGGUUAAAC   1   **||=|||||||||||*||||||* targets:3541   CAACUUGUCCAGUUAUACAAUUUA   3564 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105783041 (LOC105783041), transcript variant X2, mRNA	hypothetical protein(LOC105783041)	coding protein	psRNATarget
XM_012608218.1	ncRNA:24   AAUGGACAGGUCAAUAGGUUAAAC   1   **||=|||||||||||*||||||* targets:3541   CAACUUGUCCAGUUAUACAAUUUA   3564 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105783041 (LOC105783041), transcript variant X5, mRNA	hypothetical protein(LOC105783041)	coding protein	psRNATarget
XM_012608216.1	ncRNA:24   AAUGGACAGGUCAAUAGGUUAAAC   1   **||=|||||||||||*||||||* targets:3541   CAACUUGUCCAGUUAUACAAUUUA   3564 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105783041 (LOC105783041), transcript variant X3, mRNA	hypothetical protein(LOC105783041)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).