| ncRNA ID | gra-miR8729 |
| Species | Gossypium raimondii |
| Class | miRNA |
| Genome position | chr2:534925-535123 [+] |
| Reference genome | Graimondii2_0 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 169 - CUAAAAUCGAGCAUAGACAUC - 189 |
| Stem-loop(if miRNA) |
A AUU A - AA G GGUAGUCUUCUUAUCCACUAAG UUUAAGGGUAGGGGU UUGUUCCU GUGUUUAU CUCGAUUU AGCCUU GUUUUUGUCUCCCUAUUUCGAGAAAGG C ACCC U |||||||| |||||||| |||||||| |||||| ||||||||||||||||||||||||||| | |||| C AAUAAGGA UACAGAUA GAGCUAAA UCGGAA CAAAAACAGAGGGAUGAGGCUCUUUUC G CCCC G - CUC C A CC G ------------------AUUU AAGUGCCUCCCCCAA |
| Stem-loop sequence | AUUGUUCCUAUUGUGUUUAUACUCGAUUUAGCCUUAAGUUUUUGUCUCCCUAUUUCGAGAAAGGGCGGUAGUCUUCUUAUCCACUAAGACCCUUUAAGGGUAGGGGUUCGAACCCCCUCCGUGAACCCCUUUAGGCUUUUCUCGGAGUAGGGAGACAAAAACCCAAGGCUAAAAUCGAGCAUAGACAUCUCAGGAAUAA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_012612833.1 |
|
1.5 | PREDICTED: Gossypium raimondii pentatricopeptide repeat-containing protein At2g35030, mitochondrial (LOC105786419), mRNA | pentatricopeptide repeat-containing protein At2g35030, mitochondrial(LOC105786419) | coding protein | psRNATarget | |||||||||
| XM_012591607.1 |
|
2.5 | PREDICTED: Gossypium raimondii putative calcium-binding protein CML19 (LOC105770409), mRNA | putative calcium-binding protein CML19(LOC105770409) | coding protein | psRNATarget |
| 1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |