Search result

BaseInfo

ncRNA ID	gra-miR8685
Species	Gossypium raimondii
Class	miRNA
Genome position	chr2:211480-211705 [-]
Reference genome	Graimondii2_0
Source	miRBase
Length	24
Mature sequence(if miRNA)	11 - AGACGACACUUCAAAGAUUUCUCC - 34
Stem-loop(if miRNA)	U        AUCA   A    A           A              AAA     A    A         GUGU   UGGGGUGAUUAUGUUCGGUUUUAUCUUUGGGUUGUCU  GACUUUCU    GGA AAGU UUUGAAGUGUC UUUGUUGAGCAGUC   UGGAU UUCG AUAAAGGUG    GUC                                     C  ||||||||    ||| |||| ||||||||||| ||||||||||||||   ||||| |||| |||||||||    |||  UUGAGAGA    CCU UUUA AAACUUCACAG AGAUAGCUCGUUAG   GCUUG GAGU UGUUUCCAU    AUA                                     U -        --AC   C    G           C              CUG     A    C         ---A   UGAGCCAAAAUUGGGGAAACUAGAGAGAAAUCUCAUC
Stem-loop sequence	UGACUUUCUAUCAGGAAAAGUAUUUGAAGUGUCAUUUGUUGAGCAGUCAAAUGGAUAUUCGAAUAAAGGUGGUGUGUCUGGGGUGAUUAUGUUCGGUUUUAUCUUUGGGUUGUCUCUCUACUCUAAAGAGAGAUCAAAGGGGUUAAAACCGAGUAUAAUACCUUUGUCUGAGAGUUCGGUCGAUUGCUCGAUAGACGACACUUCAAAGAUUUCUCCCAAGAGAGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012625065.1	ncRNA:24   CCUCUUUAGAAACUUCACAGCAGA   1   ||||=|=|=||||||||||||||| targets:1508   GGAGGAGUUUUUGAAGUGUCGUCU   1531 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii glycerol-3-phosphate acyltransferase 3-like (LOC105795445), mRNA	glycerol-3-phosphate acyltransferase 3-like(LOC105795445)	coding protein	psRNATarget
XM_012629418.1	ncRNA:24   CCUCUUUAGAAACUUCACAGCAGA   1   ||||||=||||*|||||||||||| targets:412   GGAGAAGUCUUCGAAGUGUCGUCU   435 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105799065 (LOC105799065), transcript variant X3, mRNA	uncharacterized LOC105799065(LOC105799065)	coding protein	psRNATarget
XM_012629420.1	ncRNA:24   CCUCUUUAGAAACUUCACAGCAGA   1   ||||||=||||*|||||||||||| targets:461   GGAGAAGUCUUCGAAGUGUCGUCU   484 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105799065 (LOC105799065), transcript variant X6, mRNA	uncharacterized LOC105799065(LOC105799065)	coding protein	psRNATarget
XM_012629417.1	ncRNA:24   CCUCUUUAGAAACUUCACAGCAGA   1   ||||||=||||*|||||||||||| targets:498   GGAGAAGUCUUCGAAGUGUCGUCU   521 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105799065 (LOC105799065), transcript variant X2, mRNA	uncharacterized LOC105799065(LOC105799065)	coding protein	psRNATarget
XM_012629416.1	ncRNA:24   CCUCUUUAGAAACUUCACAGCAGA   1   ||||||=||||*|||||||||||| targets:560   GGAGAAGUCUUCGAAGUGUCGUCU   583 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105799065 (LOC105799065), transcript variant X1, mRNA	uncharacterized LOC105799065(LOC105799065)	coding protein	psRNATarget
XM_012587723.1	ncRNA:24   CCUCUUUAGAAACUUCACAGCAGA   1   ||||||=*|||||||||||||||* targets:1443   GGAGAAGCCUUUGAAGUGUCGUCC   1466 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii uncharacterized LOC105768030 (LOC105768030), transcript variant X3, mRNA	uncharacterized LOC105768030(LOC105768030)	coding protein	psRNATarget
XM_012587724.1	ncRNA:24   CCUCUUUAGAAACUUCACAGCAGA   1   ||||||=*|||||||||||||||* targets:2549   GGAGAAGCCUUUGAAGUGUCGUCC   2572 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii uncharacterized LOC105768030 (LOC105768030), transcript variant X4, mRNA	uncharacterized LOC105768030(LOC105768030)	coding protein	psRNATarget
XM_012587721.1	ncRNA:24   CCUCUUUAGAAACUUCACAGCAGA   1   ||||||=*|||||||||||||||* targets:2661   GGAGAAGCCUUUGAAGUGUCGUCC   2684 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii uncharacterized LOC105768030 (LOC105768030), transcript variant X1, mRNA	uncharacterized LOC105768030(LOC105768030)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).