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BaseInfo

ncRNA ID	gra-miR530a
Species	Gossypium raimondii
Class	miRNA
Genome position	chr13:58084673-58084814 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	21
Mature sequence(if miRNA)	112 - AGGUGCAGAUGCAGUUGCAGG - 132
Stem-loop(if miRNA)	GUA  U          U     C         A       --          GU  GAAAA        CUGU    GC UUUAUCUGCA UUGCA CUGCACCUU UUGUUUG  UUUCAGCUAU  CA     ACAAAACA    A    || |||||||||| ||||| ||||||||| |||||||  ||||||||||  ||     ||||||||    CG AAGUGGACGU GACGU GACGUGGAG AACAAAC  GAGGUUGGUG  GU     UGUUUUGU    A UAC  U          U     A         A       CA          UG  ----G        AUAG
Stem-loop sequence	GUAGCUUUUAUCUGCAUUUGCACCUGCACCUUAUUGUUUGUUUCAGCUAUGUCAGAAAAACAAAACACUGUAAGAUAUGUUUUGUGUGGUGUGGUUGGAGACCAAACAAAGAGGUGCAGAUGCAGUUGCAGGUGAAUGCCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012630629.1	ncRNA:21   GGACGUUGACGUAGACGUGGA   1   ||||||*|||||||||||||| targets:749   CCUGCACCUGCAUCUGCACCU   769 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii WD repeat-containing protein 44 (LOC105799854), mRNA	WD repeat-containing protein 44(LOC105799854)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).