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BaseInfo

ncRNA ID	gra-miR8668
Species	Gossypium raimondii
Class	miRNA
Genome position	chr13:57945328-57945524 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	20
Mature sequence(if miRNA)	168 - UUUUGGAAUCAAGACUACAU - 187
Stem-loop(if miRNA)	U     U     U              C   AAU                    U        U     C   UUCCCCUC  A          C      AUUGU UCAAU UAGUCUUGAUUCUA AAA   UAACCCUUAACGUUUACACA UGUGUAAU UGGUC UUU        CU UUUUGCUUUU UUUGU  ||||| ||||| |||||||||||||| |||   |||||||||||||||||||| |||||||| ||||| |||        || |||||||||| ||||G  UGACA AGUUA AUCAGAACUAAGGU UUU   AUUGGGAGUUGUAAAUGUGU ACACGUUA ACCAG AAA        GA AAAAUGAAAG AAACA U     C     C              -   AUU                    U        C     -   --CAAAAC  C          U
Stem-loop sequence	UAUUGUUUCAAUUUAGUCUUGAUUCUACAAAAAUUAACCCUUAACGUUUACACAUUGUGUAAUUUGGUCCUUUUUCCCCUCCUAUUUUGCUUUUCUUUGUGACAAAUGAAAGUAAAACAGCAAAACAAAGACCACAUUGCACAUUGUGUAAAUGUUGAGGGUUAUUAUUUUGGAAUCAAGACUACAUUGACACAGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012625897.1	ncRNA:20   UACAUCAGAACUAAGGUUUU   1   ||*||||||||||||||||| targets:1436   AUUUAGUCUUGAUUCCAAAA   1455 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii uncharacterized LOC105796283 (LOC105796283), transcript variant X2, mRNA	uncharacterized LOC105796283(LOC105796283)	coding protein	psRNATarget
XM_012625896.1	ncRNA:20   UACAUCAGAACUAAGGUUUU   1   ||*||||||||||||||||| targets:1526   AUUUAGUCUUGAUUCCAAAA   1545 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii uncharacterized LOC105796283 (LOC105796283), transcript variant X1, mRNA	uncharacterized LOC105796283(LOC105796283)	coding protein	psRNATarget
XM_012622647.1	ncRNA:20   UACAUCAGAACUAAGGUUUU   1   ||*|*||||||||||||||| targets:819   AUCUUGUCUUGAUUCCAAAA   838 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii phosphatidylinositol/phosphatidylcholine transfer protein SFH8-like (LOC105793798), transcript variant X3, mRNA	phosphatidylinositol/phosphatidylcholine transfer protein SFH8-like(LOC105793798)	coding protein	psRNATarget
XM_012622646.1	ncRNA:20   UACAUCAGAACUAAGGUUUU   1   ||*|*||||||||||||||| targets:996   AUCUUGUCUUGAUUCCAAAA   1015 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii phosphatidylinositol/phosphatidylcholine transfer protein SFH8-like (LOC105793798), transcript variant X2, mRNA	phosphatidylinositol/phosphatidylcholine transfer protein SFH8-like(LOC105793798)	coding protein	psRNATarget
XM_012622645.1	ncRNA:20   UACAUCAGAACUAAGGUUUU   1   ||*|*||||||||||||||| targets:998   AUCUUGUCUUGAUUCCAAAA   1017 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii phosphatidylinositol/phosphatidylcholine transfer protein SFH8-like (LOC105793798), transcript variant X1, mRNA	phosphatidylinositol/phosphatidylcholine transfer protein SFH8-like(LOC105793798)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).