ncRNA ID | gra-miR8649 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr13:57495015-57495185 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 11 - ACACUGUGGAAGUGGAUCUCUCUC - 34 |
Stem-loop(if miRNA) |
UC       -A        G     G     C       C                          C  G        UUAAUAU   AUAUAUA  GGAGGGAU CACUU CAUAG GUAAAAA UAAAGUAAUUUUGCAUACUUUUGUAA UA UUAUAUAA       U   |||||||  |||||||| ||||| ||||| ||||||| |||||||||||||||||||||||||| || ||||||||   UAUAUAU  UCUCUCUA GUGAA GUGUC CAUUUUU AUUUCAUUAAAAUGUGUGAAAGCAUU AU AAUAUAUU       U CA       AC        G     G     A       A                          U  A        UAAAAAU |
Stem-loop sequence | UCAUAUAUAAGGAGGGAUGCACUUGCAUAGCGUAAAAACUAAAGUAAUUUUGCAUACUUUUGUAACUAGUUAUAUAAUUAAUAUUUUAAAAAUUUAUAUAAAUAUUUACGAAAGUGUGUAAAAUUACUUUAAUUUUUACACUGUGGAAGUGGAUCUCUCUCAUAUAUAUAC |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |