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BaseInfo

ncRNA ID gra-miR8649
Species Gossypium raimondii
Class miRNA
Genome position chr13:57495015-57495185 [-]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 11 - ACACUGUGGAAGUGGAUCUCUCUC - 34
Stem-loop(if miRNA) UC       -A        G     G     C       C                          C  G        UUAAUAU
  AUAUAUA  GGAGGGAU CACUU CAUAG GUAAAAA UAAAGUAAUUUUGCAUACUUUUGUAA UA UUAUAUAA       U
  |||||||  |||||||| ||||| ||||| ||||||| |||||||||||||||||||||||||| || ||||||||
  UAUAUAU  UCUCUCUA GUGAA GUGUC CAUUUUU AUUUCAUUAAAAUGUGUGAAAGCAUU AU AAUAUAUU       U
CA       AC        G     G     A       A                          U  A        UAAAAAU
Stem-loop sequence UCAUAUAUAAGGAGGGAUGCACUUGCAUAGCGUAAAAACUAAAGUAAUUUUGCAUACUUUUGUAACUAGUUAUAUAAUUAAUAUUUUAAAAAUUUAUAUAAAUAUUUACGAAAGUGUGUAAAAUUACUUUAAUUUUUACACUGUGGAAGUGGAUCUCUCUCAUAUAUAUAC

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).