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BaseInfo

ncRNA ID	gra-miR7502e
Species	Gossypium raimondii
Class	miRNA
Genome position	chr13:57171412-57171538 [-]
Reference genome	Graimondii2_0
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UUAACGGUAGAAAUGGAUGAA - 31
Stem-loop(if miRNA)	A       U                      -AAA UG  GUAGCUGACACAUGGCUUUGUCAC  GUUAAAA AUUUAUCUAUUUUUACUGUUAA    U  GC                        A  ||||||| ||||||||||||||||||||||    |  ||  CAAUUUU UAAGUAGGUAAAGAUGGCAAUU    A  CC                        U A       U                      CUUG --  AGAAACAUGUAACGGUACUCCAUG
Stem-loop sequence	AGUUAAAAUAUUUAUCUAUUUUUACUGUUAAAAAUUGGCGUAGCUGACACAUGGCUUUGUCACAUGUACCUCAUGGCAAUGUACAAAGACCAGUUCUUAACGGUAGAAAUGGAUGAAUUUUUUAACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012625335.1	ncRNA:21   AAGUAGGUAAAGAUGGCAAUU   1   |||||=|||||||||*||||| targets:3311   UUCAUUCAUUUCUACAGUUAA   3331 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii auxin-binding protein ABP19a-like (LOC105795634), mRNA	auxin-binding protein ABP19a-like(LOC105795634)	coding protein	psRNATarget
XM_012596393.1	ncRNA:21   AAGUAGGUAAAGAUGGCAA-UU   1   *||||||||||||||||||-|| targets:1249   CUCAUCCAUUUCUACCGUUCAA   1270 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii LON peptidase N-terminal domain and RING finger protein 3-like (LOC105774064), mRNA	LON peptidase N-terminal domain and RING finger protein 3-like(LOC105774064)	coding protein	psRNATarget
XM_012625086.1	ncRNA:21   AAGUAGGUAAAGAUGGCAAUU   1   ||||*|*|||||||||||||* targets:136   UUCACCAAUUUCUACCGUUAC   156 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii uncharacterized LOC105795455 (LOC105795455), mRNA	uncharacterized LOC105795455(LOC105795455)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).