Search result

BaseInfo

ncRNA ID gra-miR8745
Species Gossypium raimondii
Class miRNA
Genome position chr13:57000135-57000297 [+]
Reference genome Graimondii2_0
Source miRBase
Length 21
Mature sequence(if miRNA) 133 - UCAACGGAGUUGGGAGACAAA - 153
Stem-loop(if miRNA) C       GU                   C       C  A   AU  AAAU   ----C  -  UUUCCUUGGUGGCGCAUGG
 AGGUCGG  UUUUGUUUCCCGGCUCUGU GAGAGCC GA UUG  GA    GGG     AC CA                   C
 |||||||  ||||||||||||||||||| ||||||| || |||  ||    |||     || ||                   C
 UCCGGCC  AAAACAGAGGGUUGAGGCA CUCUCGG CU GAC  CU    CCC     CC CG                   C
-       UC                   A       A  C   CU  --GU   AAGUA  U  UCCUCGCAGAUCAACCUAG
Stem-loop sequence CAGGUCGGGUUUUUGUUUCCCGGCUCUGUCGAGAGCCCGAAUUGAUGAAAAUGGGCACCAUUUCCUUGGUGGCGCAUGGCCCGAUCCAACUAGACGCUCCUGCUCCAUGAACCCUGUCUCCAGCUCAGGCUCUCAACGGAGUUGGGAGACAAAACUCCGGCCU

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).