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BaseInfo

ncRNA ID gra-miR8638
Species Gossypium raimondii
Class miRNA
Genome position chr13:56581801-56582022 [-]
Reference genome Graimondii2_0
Source miRBase
Length 21
Mature sequence(if miRNA) 192 - UGAAUACAGGAAUGGCUCUCU - 212
Stem-loop(if miRNA) -  -                         C                U    U               CC    UUUA -   UACACGUUGGCCCGUUCAGAUUUAGGUGUUC
 GU GAGAAUGGUGAAUACAGGAAUGGCU UCUGUGCCAAUCUCGU AAAG GAGGGCUCUACCCUA  UCUA    C GAC                               A
 || ||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||  ||||    | |||
 CA CUCUUACCACUUAUGUUCUUACCGA AGACGCGGUUGGAGCA UUUC CUCCCGAGAUGGGAU  AGAU    C AGU                               G
U  U                         U                -    U               -U    -UCA C   ACUUUUGAAAUCCACUAUCCAAUAGAAAGGU
Stem-loop sequence GUGAGAAUGGUGAAUACAGGAAUGGCUCUCUGUGCCAAUCUCGUUAAAGUGAGGGCUCUACCCUACCUCUAUUUACGACUACACGUUGGCCCGUUCAGAUUUAGGUGUUCAGUGGAAAGAUAACCUAUCACCUAAAGUUUUCAUGACCACUUAGAUUAGGGUAGAGCCCUCUCUUUACGAGGUUGGCGCAGAUAGCCAUUCUUGUAUUCACCAUUCUCUACU

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).