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BaseInfo

ncRNA ID ath-miR5644
Species Arabidopsis thaliana
Class miRNA
Genome position chr5:16649994-16650138 [+]
Reference genome TAIR10
Source miRBase
Length 20
Mature sequence(if miRNA) 3 - GUGGGUUGCGGAUAACGGUA - 22
Stem-loop(if miRNA) UA    -         AA   UA   GGUAGGCACAGAUCCGAUAUCCUAAAAUUUGGAAUACAUAAAUUAGG
  GUGG GUUGCGGAU  CGG  GCC                                               A
  |||| |||||||||  |||  |||
  CAUC CAACGCCUA  GCC  UAG                                               U
AG    A         CA   --   GCGUACAUUAUAUUUAUUAAUGAACGUCUACAACUGCCUAGAUUACC
Stem-loop sequence UAGUGGGUUGCGGAUAACGGUAGCCGGUAGGCACAGAUCCGAUAUCCUAAAAUUUGGAAUACAUAAAUUAGGAUCCAUUAGAUCCGUCAACAUCUGCAAGUAAUUAUUUAUAUUACAUGCGGAUCCGACAUCCGCAACACUACGA

Reference

1 PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis";
Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN;
Genome Res. 22:163-176(2012).