ncRNA ID | ath-miR5644 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr5:16649994-16650138 [+] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 20 |
Mature sequence(if miRNA) | 3 - GUGGGUUGCGGAUAACGGUA - 22 |
Stem-loop(if miRNA) |
UA    -         AA   UA   GGUAGGCACAGAUCCGAUAUCCUAAAAUUUGGAAUACAUAAAUUAGG   GUGG GUUGCGGAU  CGG  GCC                                               A   |||| |||||||||  |||  |||   CAUC CAACGCCUA  GCC  UAG                                               U AG    A         CA   --   GCGUACAUUAUAUUUAUUAAUGAACGUCUACAACUGCCUAGAUUACC |
Stem-loop sequence | UAGUGGGUUGCGGAUAACGGUAGCCGGUAGGCACAGAUCCGAUAUCCUAAAAUUUGGAAUACAUAAAUUAGGAUCCAUUAGAUCCGUCAACAUCUGCAAGUAAUUAUUUAUAUUACAUGCGGAUCCGACAUCCGCAACACUACGA |
1 | PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012). |