Search result

BaseInfo

ncRNA ID gra-miR8776d
Species Gossypium raimondii
Class miRNA
Genome position chr13:51870292-51870491 [+]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 167 - UUUCAAAGUCCUUGCAUACUAUUU - 190
Stem-loop(if miRNA) ACA  G   C              A     C   A     C  U  UCACACAAGAUCCAUGCCCAAUGGCACGCUUUAUAUAAUUCGAGCUCGUGGUC
   GG GAG AAAUGGUAUGCAAG ACUUU AAA UUUUC UC GC                                                     U
   || ||| |||||||||||||| ||||| ||| ||||| || ||
   CC CUC UUUAUCAUACGUUC UGAAA UUU AAAAG AG GU                                                     C
UGA  A   U              C     C   A     A  U  UACCGAAGUUCGUAAAGCAAAAGGUUUAUUAACCAGCCAGAAAUCAAUAAUUG
Stem-loop sequence ACAGGGGAGCAAAUGGUAUGCAAGAACUUUCAAAAUUUUCCUCUGCUCACACAAGAUCCAUGCCCAAUGGCACGCUUUAUAUAAUUCGAGCUCGUGGUCUCGUUAAUAACUAAAGACCGACCAAUUAUUUGGAAAACGAAAUGCUUGAAGCCAUUGUGAAGAAAAAUUUCAAAGUCCUUGCAUACUAUUUUCUCACCAGU

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).