ncRNA ID | gra-miR8776c |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr13:51867510-51867714 [+] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 172 - UUUCAAAGUCCUUGCAUACUAUUU - 195 |
Stem-loop(if miRNA) |
A   ACCG    GC              A     C         CUCUGC     CAAGAUCCA   CCACUAGCACGGUUUAUAUAAUUCGAACUACGUGGUCCCAUU  ACU    GGGA  AAAUAGUAUGCAAG ACUUU AAAUUUUUC      UCACA         UGC                                          A  |||    ||||  |||||||||||||| ||||| |||||||||      |||||         |||                                          A  UGA    CCCU  UUUAUCAUACGUUC UGAAA UUUAAAAAG      AGUGU         CCG                                          U -   -CCA    --              C     C         -----A     -------UA   AAGUUCGUAAGGCAAAAGGUUUAUUAACCAGCCAGAAAUCAA |
Stem-loop sequence | AACUACCGGGGAGCAAAUAGUAUGCAAGAACUUUCAAAUUUUUCCUCUGCUCACACAAGAUCCAUGCCCACUAGCACGGUUUAUAUAAUUCGAACUACGUGGUCCCAUUAAUAACUAAAGACCGACCAAUUAUUUGGAAAACGGAAUGCUUGAAGCCAUUGUGAAGAAAAAUUUCAAAGUCCUUGCAUACUAUUUUCCCACCAGU |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |