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BaseInfo

ncRNA ID gra-miR8776c
Species Gossypium raimondii
Class miRNA
Genome position chr13:51867510-51867714 [+]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 172 - UUUCAAAGUCCUUGCAUACUAUUU - 195
Stem-loop(if miRNA) A   ACCG    GC              A     C         CUCUGC     CAAGAUCCA   CCACUAGCACGGUUUAUAUAAUUCGAACUACGUGGUCCCAUU
 ACU    GGGA  AAAUAGUAUGCAAG ACUUU AAAUUUUUC      UCACA         UGC                                          A
 |||    ||||  |||||||||||||| ||||| |||||||||      |||||         |||                                          A
 UGA    CCCU  UUUAUCAUACGUUC UGAAA UUUAAAAAG      AGUGU         CCG                                          U
-   -CCA    --              C     C         -----A     -------UA   AAGUUCGUAAGGCAAAAGGUUUAUUAACCAGCCAGAAAUCAA
Stem-loop sequence AACUACCGGGGAGCAAAUAGUAUGCAAGAACUUUCAAAUUUUUCCUCUGCUCACACAAGAUCCAUGCCCACUAGCACGGUUUAUAUAAUUCGAACUACGUGGUCCCAUUAAUAACUAAAGACCGACCAAUUAUUUGGAAAACGGAAUGCUUGAAGCCAUUGUGAAGAAAAAUUUCAAAGUCCUUGCAUACUAUUUUCCCACCAGU

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).